Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 194 1e-43 seq1 143 2e-28 seq8 134 1e-25 seq9 120 2e-21 seq10 105 5e-17 seq3 104 2e-16 seq7 89.7 4e-12 >seq6 Length=26286742 Score = 194 bits (214), Expect = 1e-43 Identities = 450/676 (67%), Gaps = 2/676 (0%) Strand=Plus/Minus Query 551910 AGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAA 551969 ||||| ||||| || ||||| || || | ||||| ||| | |||| || |||||||| Sbjct 6212255 AGAACGGCTTGTGAGAGAGCGAAGAGAACGCTTTCCTCTACTGCTCAGACGACTATTGAG 6212196 Query 551970 GTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAA 552029 | ||||| || ||||| |||||| | || | || ||| | || | ||||| Sbjct 6212195 ATTGATTCTTTGCACGAGGGTGTTGATTTCTACGCGACGATATCGCGTGCGAGGTTTGAG 6212136 Query 552030 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGAT 552089 || || |||||||| || ||| || || || || || ||||||| |||||| Sbjct 6212135 GAGATGAACATGGATCTCTTCAGGAAATGTATGGATCCTGTGGAGAAAGTTTTGAGAGAT 6212076 Query 552090 TCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATT 552149 | ||| |||| || | || ||||| | || |||||||| ||||| || || ||| Sbjct 6212075 GCTAAGCTTGACAAGAGCCGTGTCCATGAGGTGGTTCTTGTTGGAGGATCCACGAGGATT 6212016 Query 552150 CCTAAAATTC-GCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGT 552208 ||||| |||| || | | || ||| ||| ||||| || | | | |||| | Sbjct 6212015 CCTAAGATTCAGCAGCTTCTGCAGGACTTTTTT-AATGGGAAGGAGCTTTGTAAAAGCAT 6211957 Query 552209 TAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACA 552268 |||||| ||||| |||||||||||||| || || |||| || || ||||| |||| | Sbjct 6211956 TAATCCTGATGAAGCTGTTGCCTATGGAGCTGCGGTTCAGGCGGCGATTCTGACTGGTGA 6211897 Query 552269 AACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 | || || | ||| || || | ||| | || || | || || || || | Sbjct 6211896 AGGAAGCGACAAGGTGCAAGATCTTCTGCTTCTTGACGTGGCGCCGCTGAGCCTCGGAAT 6211837 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 || || | ||| || | |||||| | ||| || || || || |||||||||| Sbjct 6211836 CGAGACGGCTGGTGGAGTGATGACTGTGTTGATCCCGAGGAACACGACGGTTCCTTGTAA 6211777 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 || | || || ||||| ||| | || ||||| ||| |||| || ||| | | Sbjct 6211776 GAAGGAGCAAGTGTTCTCTACCTATGCGGACAATCAGCCTGGTGTTCTGATCCAAGTCTA 6211717 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 ||||||||| | |||||||| || || | ||||| |||||| | | | || Sbjct 6211716 TGAAGGAGAGCGTGCGAGGACTAAAGACAACAACCTTCTTGGAACTTTTGAGCTCAAGGG 6211657 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 || |||||||| || |||||||| || || || | ||| ||||| || || ||||| Sbjct 6211656 GATCCCTCCTGCGCCGCGTGGAGTCCCTCAGATCAATGTTTGCTTCGACATTGACGCCAA 6211597 Query 552569 TGGAATTTTGAATGTG 552584 ||| || ||||| ||| Sbjct 6211596 TGGGATCTTGAACGTG 6211581 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| | ||| || |||||||| ||| || || || ||||| ||||| ||||| || Sbjct 15797174 GAGCCTGAGGACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCT 15797115 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 | ||| || || || || |||||||| || || || ||||| || || || ||||| || Sbjct 15797114 TCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTC 15797055 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAG 563434 ||||| ||||| || || || ||||| || |||| | | || || | || Sbjct 15797054 CTTATCCTGAATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTC-TCCACCTCCAAAG 15796996 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || || || | ||| || || ||||||||||| Sbjct 15796995 TAATCGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 15796956 >seq1 Length=28635137 Score = 143 bits (158), Expect = 2e-28 Identities = 462/705 (66%), Gaps = 18/705 (3%) Strand=Plus/Minus Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953 ||||||| | | || || ||||| ||||| ||||| || | ||||||| || | | Sbjct 15923615 AGCTCTTAGGAGGCTGAGGACTGCCTGCGAGAGAGCAAAGAGGACTCTTTCTTCCACTGC 15923556 Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTA-TAATACGC-CTATT 552011 || ||||| || || | || || ||||||||||| ||||||| || | ||| || Sbjct 15923555 GCAGACCACCATCGAGATTGACTCTTTATTTGAGGGGATTGATTTCTATTCCGCACTCAC 15923496 Query 552012 TCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTA 552071 ||| | | | || ||||| | ||||| || || || || || || ||| Sbjct 15923495 TCGTG--CTAGGTTCGAAGAGCTCAACATGGATCTTTTCAGGAAGTGTATGGAGCCTGTA 15923438 Query 552072 GAACAAGTTT-TAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGT 552130 || |||| | || | ||| | ||||| || || || ||| || || |||| || || Sbjct 15923437 GAG-AAGTGTCTACGTGATGCTAAGATGGACAAGAGCACAGTCCACGATGTTGTCCTGGT 15923379 Query 552131 TGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT----AAGTTCTTATTTCAATG 552186 || || |||||| | ||||| |||| || | | | || ||| | | ||||||| Sbjct 15923378 CGGAGGTTCTACACGTATTCC-AAAAGTC-CAACAGCTTCTCCAAGATTTC--TTCAATG 15923323 Query 552187 GTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAAT 552244 ||||| | | || |||| |||| || || |||||||| || |||||||| || | Sbjct 15923322 GTAAAGAGCTT--TGCAAGTCCATTAACCCTGACGAGGCTGTGGCTTATGGTGCAGCGGT 15923265 Query 552245 TCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGA 552304 ||| | ||||||||| || || |||| || | ||| | || | || | || Sbjct 15923264 TCAGGGTGCTATTCTTAGCGGTGAAGGCAATGAGAAGGTGCAAGACCTTCTTCTCTTGGA 15923205 Query 552305 TGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGA 552364 || || ||||| ||||||||| | ||||| | ||| || ||||||| | | ||| | Sbjct 15923204 CGTGACCCCTCTCTCTCTTGGTCTTGAAACCGCTGGTGGAGTTATGACCACCTTGATCCA 15923145 Query 552365 TAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCA 552424 ||||| || |||||||| |||||| | || || || || || ||||| || || Sbjct 15923144 GAGAAACACAACTATTCCGACTAAAAAGGAGCAGGTTTTCTCCACCTACTCAGACAACCA 15923085 Query 552425 AACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCA 552484 | | ||| || || | | ||||| || ||| || ||||| || || | Sbjct 15923084 GCCAGGTGTGTTGATCCAGGTCTACGAAGGTGAGAGAGCTAGAACCAAAGACAACAACCT 15923025 Query 552485 ACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGA 552544 ||||| | ||| | | || || ||||||||||| ||||| || || || || Sbjct 15923024 CCTTGGAAAGTTTGAGCTCTCCGGCATCCCTCCTGCTCCACGTGGTGTTCCTCAGATCAC 15922965 Query 552545 AGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 || |||||| || ||||| || || || | ||||| |||| Sbjct 15922964 GGTCTGTTTCGACATTGATGCAAACGGCATCCTCAATGTCTCTGC 15922920 Score = 127 bits (140), Expect = 2e-23 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | || || || ||||| || || || ||||||||||| || | |||| Sbjct 7749103 AAGTGACTAAGGCTGTTATCACTGTGCCTGCTTACTTTAATGACTCGCAGAGGACGGCTA 7749162 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 ||||||||||||| ||||||||||| ||| |||||||||||||||| |||||||| |||| Sbjct 7749163 CTAAAGATGCTGGTCGTATTGCTGGGCTTGATGTTCTTCGTATTATTAATGAACCCACTG 7749222 Query 550509 CTGCTGCACTTGCATATGGACTTGA 550533 ||||| | | || ||||| |||| Sbjct 7749223 CTGCTTCTTTGGCTTATGGTTTTGA 7749247 Score = 114 bits (126), Expect = 1e-19 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | || || || ||||| || || || |||||| ||||| | | ||||| Sbjct 7754605 AAGTGACCAAGGCTGTCATCACTGTGCCTGCTTACTTTAATAACTCAGAGAGGGCAGCTA 7754664 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 ||||||||||||| || ||||||| ||| |||||||||||||||||||||| || |||| Sbjct 7754665 CTAAAGATGCTGGTCGCGTTGCTGGGCTTGATGTTCTTCGTATTATCAATGAGCCCACTG 7754724 Query 550509 CTGCTGCACTTGCATATG 550526 ||||| | | || |||| Sbjct 7754725 CTGCTTCTTTGGCTTATG 7754742 >seq8 Length=21613650 Score = 134 bits (148), Expect = 1e-25 Identities = 437/677 (65%), Gaps = 4/677 (1%) Strand=Plus/Plus Query 551910 AGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAA 551969 ||||| |||||||| ||||| || | | ||||| || | |||| || || || || Sbjct 19423097 AGAACGGCTTGCGAGAGAGCGAAGAGGACGCTTTCGTCGACTGCTCAGACTACCATAGAG 19423156 Query 551970 GTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAA 552029 | ||||| || ||||| |||| | | || | || || | || | ||||| Sbjct 19423157 ATTGATTCCTTGCACGAGGGGGTTGACTTCTACGCGACGATATCACGCGCGAGGTTTGAG 19423216 Query 552030 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGAT 552089 || || ||| | || || || || || || || || ||||| |||| ||| Sbjct 19423217 GAGATGAACATGGATTTGTTCAGGAAGTGTATGGATCCTGTTGAGAAAGTTCTAAGGGAT 19423276 Query 552090 TCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATT 552149 |||||||||| || | || |||||| |||| |||||||| ||||| || || ||| Sbjct 19423277 GCAAAGATTGACAAGAACCGTGTTCATGAAGTTGTTCTTGTTGGAGGATCGACTAGGATT 19423336 Query 552150 CCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG 552207 || || |||| | | || ||| | || || ||||| || | | | | ||| Sbjct 19423337 CCGAAGATTCAGCAGCTTTTGCAAGATTTTTTT--AATGGGAAGGAGCTTTGTAAGAGTA 19423394 Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 |||| || ||||| |||||||| || || || || | || || || ||||| | || Sbjct 19423395 TTAACCCTGATGAAGCTGTTGCGTACGGAGCTGCCGTGCAGGCCGCGATTCTGACCGGTG 19423454 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 || || || | ||| || | ||||| | || || | || | |||||| Sbjct 19423455 AAGGGAGCGATAAGGTGCAAGATCTGTTACTTCTTGACGTGGCGCCGTTGAGTCTTGGAC 19423514 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | || || | || || | |||||| | ||| || || || ||| ||||||||| Sbjct 19423515 TTGAGACGGCGGGTGGGGTGATGACTGTGTTGATCCCGAGGAACACGACTGTTCCTTGTA 19423574 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 | || | || || || || ||||| |||||||| ||| |||| |||||| | | Sbjct 19423575 AGAAGGAGCAGGTGTTCTCGACTTATTCGGATAATCAGCCTGGTGTTTTGATTCAAGTGT 19423634 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 |||||| || | || | ||| || || | ||||| || ||| | | | | Sbjct 19423635 ATGAAGGGGAGCGTGCGAGGACGAGAGACAACAACCTTCTTGGGACGTTTGAGCTCAAGG 19423694 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 | || ||||||||||| |||||||| || || || | || ||| ||||| || || | Sbjct 19423695 GGATCCCTCCTGCTCCACGTGGAGTTCCTCAGATCAATGTGTGTTTTGATATAGACGCGA 19423754 Query 552568 ATGGAATTTTGAATGTG 552584 | || || ||||| ||| Sbjct 19423755 ACGGGATCTTGAACGTG 19423771 Score = 105 bits (116), Expect = 5e-17 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 550387 AGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 ||||| |||| | || || | ||||| || || || |||||||| || || | | Sbjct 14852075 AGAAGGTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGATTCGCAGAGGACGG 14852016 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 |||||||||||||||| ||||||||||| | | |||||||||||||| ||||| |||| Sbjct 14852015 CTACTAAAGATGCTGGTCGTATTGCTGGGTTGGAGGTTCTTCGTATTATTAATGAGCCTA 14851956 Query 550506 CTGCTGCTGCACTTGCATATGGACTTGA 550533 |||||||| | | || ||||| |||| Sbjct 14851955 CTGCTGCTTCGTTGGCTTATGGGTTTGA 14851928 >seq9 Length=37155481 Score = 120 bits (132), Expect = 2e-21 Identities = 557/872 (64%), Gaps = 18/872 (2%) Strand=Plus/Plus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 || ||| ||| || ||||||| | | ||||| ||| ||||| || || ||| Sbjct 23459400 GGTACTTTTGATGTCTCTCTTCTCACGATTGAAGAAGGTATCTTTGAGGTCAAGGCCACT 23459459 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 |||||| |||||||||| || || ||||| || || || |||| | ||| | || Sbjct 23459460 GCTGGAGACACTCATCTTGGCGGGGAGGATTTCGACAACAGGATGGTTAACCAT--TTTG 23459517 Query 551845 TTGAAGATTTTAAACGAAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCG 551902 | |||| ||||| | || | ||| || || || | | | | | ||||||| | Sbjct 23459518 TCCAAGAGTTTAAGAGGAAGAGCAAGAAGGACAT-TAGCGGTAACC-CTAGAGCTCTTAG 23459575 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 | | || ||||| ||||| || || || | ||||||| || | | || ||||| Sbjct 23459576 GAGGTTGAGGACTGCCTGCGAGAGGGCAAAGAGGACTCTTTCTTCCACTGCGCAGACCAC 23459635 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 || || | || || ||||||||||| ||||||| || | | | | | || | Sbjct 23459636 CATCGAGATTGACTCTTTATTTGAGGGGATTGATTTCTATTCTGCGCTCACTCGTGCTAG 23459695 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT- 552081 || ||||| | ||||| || |||| || || || || || |||| | Sbjct 23459696 GTTCGAAGAGCTCAACATGGATCTTTTCCGAAAGTGTATGGAGCCTGTGGAG-AAGTGTC 23459754 Query 552082 TAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTA 552141 || | ||| | ||||| || || || || || || |||| || || || || |||| Sbjct 23459755 TACGTGATGCTAAGATGGACAAGAGCACGGTCCACGATGTTGTCCTCGTCGGAGGCTCTA 23459814 Query 552142 CAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAA 552199 | | || || ||| | | | | | ||| | | |||||||| ||| | | Sbjct 23459815 CGCGTATCCCGAAAGTCCAACAGCTTCTCCAAGATTTC--TTCAATGGCAAAGAGCTT-- 23459870 Query 552200 TGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATT 552257 || |||| |||| || || |||||||| || |||||||| || |||| | |||||| Sbjct 23459871 TGCAAGTCCATTAACCCTGACGAGGCTGTGGCTTATGGTGCAGCGGTTCAGGGTGCTATT 23459930 Query 552258 CTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTA 552317 ||| || || |||| || | ||| | || | || | || || || ||||| Sbjct 23459931 CTTAGCGGTGAAGGCAATGAGAAGGTGCAAGACCTTCTTCTCTTGGACGTGACACCTCTT 23459990 Query 552318 TCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACT 552377 || |||||| | ||||| | ||| || ||||||| | | ||| | ||||| || ||| Sbjct 23459991 TCACTTGGTCTTGAAACTGCTGGCGGAGTTATGACCACCTTGATCCAGAGAAACACAACT 23460050 Query 552378 ATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACA 552437 || || ||||| | || || || || || ||||||||||| | | ||| | Sbjct 23460051 ATCCCGACCAAAAAGGAGCAGGTCTTCTCCACCTACTCAGATAATCAGCCAGGTGTGTTA 23460110 Query 552438 ATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT 552497 || || | | ||||| || ||| || ||||| || || | ||||| | ||| Sbjct 23460111 ATCCAGGTCTACGAAGGTGAGAGAGCTAGAACCAAAGACAACAACCTCCTTGGGAAGTTT 23460170 Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557 | | || || ||||||||||| ||||| || || || || ||| |||||| Sbjct 23460171 GAGCTCTCCGGCATCCCTCCTGCTCCACGTGGCGTCCCTCAGATCACAGTCTGTTTCGAC 23460230 Query 552558 ATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 || || || || || ||| | || || |||| Sbjct 23460231 ATTGACGCAAACGGCATTCTCAACGTCTCTGC 23460262 Score = 105 bits (116), Expect = 5e-17 Identities = 315/477 (66%), Gaps = 12/477 (3%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 ||||||| ||||||||||||| || || |||||||||||| |||| | ||| | |||| Sbjct 2960079 TGGAGATACTCATCTTGGTGGTGAGGACTTTGATAATAGAATGGTGAACCAT--TTTGTT 2960022 Query 551847 GAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGT 551906 | || ||||| | || | ||| ||| | || | | | |||||| | | Sbjct 2960021 CAGGAGTTTAAGAGGAAGAGCAAGAAGGATATTACTGGAAACCCGAGAGCTCTCAGGAGG 2959962 Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 | || || || || || ||||| || || ||||||| || | |||| ||||||||| Sbjct 2959961 TTGAGGACGGCGTGTGAGAGAGCGAAGAGAACTCTTTCCTCCACTGCTCAGACCACTATT 2959902 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 || | || || | |||||||| ||||||| | | | | | | || | || Sbjct 2959901 GAGATTGACTCTCTCTTTGAGGGTATTGATTTCTACTCTGCGCTGACCCGTGCTAGGTTC 2959842 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT-TTTAAG 552085 || || || | ||| | ||||| || || || || || | | |||| | || | Sbjct 2959841 GAGGAGCTTAATATGGATTTATTTAGGAAGTGTATGGAGCCTGT-GGAGAAGTGTCTACG 2959783 Query 552086 AGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAG 552145 ||| | ||||| ||||| || || ||||| |||| |||||||||||||| || | Sbjct 2959782 TGATGCTAAGATGGATAAGAGCAGTGTGCATGATGTTGTTCTTGTTGGTGGATCCACTCG 2959723 Query 552146 AATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 ||||| || ||| | || || || || ||| || || || | | || || Sbjct 2959722 TATTCCCAAGGTTCAGCAGTTGCTTCAG-GATTTTTTTAACGGGAAGGAGCT--TTGCAA 2959666 Query 552205 G--TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | || || |||||||||||||| || ||||| || | || | ||||||||| Sbjct 2959665 GTCTATCAACCCGGATGAGGCTGTTGCTTACGGTGCTGCCGTCCAGGGAGCTATTCT 2959609 Score = 105 bits (116), Expect = 5e-17 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 550387 AGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 ||||| |||| | || || | ||||| || || || |||||||| || || | | Sbjct 29964864 AGAAGGTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGATTCGCAGAGGACGG 29964805 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 |||||||||||||||| ||||||||||| | | |||||||||||||| ||||| |||| Sbjct 29964804 CTACTAAAGATGCTGGTCGTATTGCTGGGTTGGAGGTTCTTCGTATTATTAATGAGCCTA 29964745 Query 550506 CTGCTGCTGCACTTGCATATGGACTTGA 550533 |||||||| | | || ||||| |||| Sbjct 29964744 CTGCTGCTTCGTTGGCTTATGGGTTTGA 29964717 Score = 96.9 bits (106), Expect = 3e-14 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATG-AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||| | ||| || ||||| || | | | |||| | ||| ||||| ||||| || || | Sbjct 16960937 GAGCCTGAGGACGAGATGCAAAGTTGACTCCTTTTG-AATGTTGTAGTCAGCGAGGGTAC 16960995 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||||||||| || || |||||||| || | |||||||||||| ||||||| |||| Sbjct 16960996 GCCCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTTTGCTGATCCTGAGGAATACCTT 16961055 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGA 563433 ||||||| ||||| || ||| || || || ||||||| | | || || | | Sbjct 16961056 CTTTATCCTGAATCTTGGCTTTAACGTTGTCGATGGTATCAGAGCTCTCCAC-CTCCAAA 16961114 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || || || || |||||||| || ||||| Sbjct 16961115 GTGATCGTCTTCCCTGTCAGTGTCTTAACGAAGATCTGCAT 16961155 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| | ||| || ||||||||||| ||| | ||| || ||||| ||||| ||||| Sbjct 16984708 GAGCCTGAGGACGAGATGAAGGGTCGACTCCTTCTGG--ATGTTGTAGTCAGCGAGAGTA 16984765 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||| || ||||| || ||||| || ||||| ||||||||||| || || ||||| Sbjct 16984766 CGTCCATCCTCGAGTTGCTTCCCGGCGAAGATAAGCCTTTGCTGATCCGGTGGGATTCCC 16984825 Query 563374 TCTTTATCTTGAATTTT 563390 || || || ||||| || Sbjct 16984826 TCCTTGTCCTGAATCTT 16984842 >seq10 Length=17599535 Score = 105 bits (116), Expect = 5e-17 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 550387 AGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 ||||| |||| | || || | ||||| || || || |||||||| || || | | Sbjct 9394487 AGAAGGTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGATTCGCAGAGGACGG 9394546 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 |||||||||||||||| ||||||||||| | | |||||||||||||| ||||| |||| Sbjct 9394547 CTACTAAAGATGCTGGTCGTATTGCTGGGTTGGAGGTTCTTCGTATTATTAATGAGCCTA 9394606 Query 550506 CTGCTGCTGCACTTGCATATGGACTTGA 550533 |||||||| | | || ||||| |||| Sbjct 9394607 CTGCTGCTTCGTTGGCTTATGGGTTTGA 9394634 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || ||||| || || ||| || || |||||||||||||| || || | | Sbjct 17168126 AGACGCAGAACAAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCAGCGAGTGTGCGT 17168067 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || || ||||| || ||||| || ||||| || |||||||| ||||| Sbjct 17168066 CCATCCTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATACCTTCC 17168007 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGT 563435 || || || || || || || || || || |||| | | || |||||||| Sbjct 17168006 TTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCAGAGCTCTCGAC-CTCGAGAGT 17167948 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || ||||| |||||||||||||| Sbjct 17167947 AATGGTCTTGCCGGTGAGCGTTTTCACGAAAATTTGCAT 17167909 >seq3 Length=31725688 Score = 104 bits (114), Expect = 2e-16 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 |||||||| || || || |||||||| || | |||||||||||||||||| || ||| Sbjct 25597007 ACTGTACCTGCTTACTTCAATGACTCGCAGAGGACAGCTACTAAAGATGCTGGTCGGATT 25597066 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | | |||||||||||||||||||| || || |||||| | | || ||||| Sbjct 25597067 GCTGGGTTGGAAGTTCTTCGTATTATCAATGAGCCCACGGCTGCTTCTTTGGCTTATGGG 25597126 Query 550529 CTTGA 550533 |||| Sbjct 25597127 TTTGA 25597131 Score = 96.9 bits (106), Expect = 3e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || || || || |||||||||||||| | |||||| | ||| Sbjct 8738832 ATAGGGATAGATCTTGGTACTACCTACTCTTGTGTTGGTGTTTACAAGAATGGTCACGTT 8738891 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || ||||||||||| ||||| ||| | | ||| || || | ||| |||||| || Sbjct 8738892 GAGATCATTGCCAATGACCAAGGAAACCGTATTACACCTTCCTGGGTTGGTTTCACTGAC 8738951 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 | ||| | ||||||| || || || |||| || ||| ||||||| | ||| Sbjct 8738952 AATGAGAGGCTCATTGGTGAGGCTGCTAAGAATCAGGCGGCTGTTAATCCTGAGAGGACT 8739011 Query 550175 ATTTTTGATGCTAAACGTTTAATTGG 550200 | ||||||| || | || ||||| Sbjct 8739012 GTCTTTGATGTCAAGAGATTGATTGG 8739037 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| || || || ||||| || ||||||||||| || || ||||| || Sbjct 20799434 ACTGTCCCAGCCTACTTCAACGACTCTCAGCGTCAAGCTACAAAGGACGCTGGTGTCATC 20799493 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || || || | ||||| ||||| || || |||||||| || |||| || || Sbjct 20799494 GCTGGTCTGAACGTGATGCGTATCATCAACGAGCCGACTGCTGCGGCTATTGCTTACGGT 20799553 Query 550529 CTTGATAA 550536 |||||||| Sbjct 20799554 CTTGATAA 20799561 Score = 86.0 bits (94), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || || || || |||||||||||||| | ||||| | ||| Sbjct 7249944 ATAGGGATAGATCTTGGTACTACCTACTCTTGTGTTGGTGTTTACAAGAATGGCCATGTT 7249885 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || ||||| ||||| ||||| ||| | | ||| || || | ||| |||||| || Sbjct 7249884 GAGATCATTGCTAATGACCAAGGAAACCGTATTACACCTTCGTGGGTTGGTTTCACTGAC 7249825 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 | ||| | ||||||| || || || |||| || ||| ||||||| | ||| Sbjct 7249824 AATGAGAGGCTCATTGGTGAGGCTGCTAAGAATCAGGCGGCTGTTAATCCTGAGAGGACT 7249765 Query 550175 ATTTTTGATG 550184 | ||||||| Sbjct 7249764 GTCTTTGATG 7249755 >seq7 Length=22597724 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || ||||| || ||| |||||||||| | || ||| | ||| Sbjct 3983762 ATAGGGATAGATCTTGGTACCACCTACTCTTGCGTTGGTGTTTACAAGAACGGTCATGTT 3983703 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||||| ||||||||||| ||||| ||| | | |||||| || | ||| ||||||| || Sbjct 3983702 GAAATCATTGCCAATGACCAAGGCAACCGTATTACTCCTTCCTGGGTTGCTTTCACCGA 3983644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027167451357010