Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq24705 513 4e-141 seq40249 506 6e-139 seq10 80.6 8e-11 >seq24705 Length=1162 Score = 513 bits (568), Expect = 4e-141 Identities = 696/964 (72%), Gaps = 5/964 (1%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || ||||| || ||||| || | ||||||||||| || | ||||| || Sbjct 200 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 259 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||||| || || || ||||| Sbjct 260 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 318 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || ||| | || ||||||||||| || || Sbjct 319 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 378 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | |||| | ||| || |||||| | || |||||||| || |||||||| Sbjct 379 TGGTGCTATTATCCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 438 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| |||||||||| || || ||| | || ||| | | |||| Sbjct 439 TGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTC 498 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 499 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 558 Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | | || ||||| |||||||||| |||| || | | || ||| || || ||||| Sbjct 559 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 618 Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289 |||| ||| | || ||||| || ||| |||||| |||||| | || ||||||||||| Sbjct 619 GATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTAC 678 Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349 ||| ||||||||| | |||||||| || || || || || || ||||||||||| || || Sbjct 679 TTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACAT 738 Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409 | ||||| ||||| || ||||| || | || || ||||||||| || |||||| Sbjct 739 GTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGT 798 Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469 |||| || || | ||||| || || | | || ||| | || || || || Sbjct 799 AACTT-CTAGTTTGTCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATT 857 Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529 ||| ||||| ||||| || ||||||||||| ||||| || || || ||||| ||||||| Sbjct 858 TGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAAT 917 Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589 || || ||||| ||||| || ||| |||||| | || ||||| | ||| ||||||| Sbjct 918 CTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 977 Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649 || || || || ||| | || || | ||||| | || ||||| || ||||||||||| Sbjct 978 TGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGG 1037 Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTG 26708 ||| || || ||||| || ||||| ||| || || | | || || ||| ||||||| Sbjct 1038 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTA-ATACTTGGGCTG 1096 Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768 || | | ||||| |||||||| || | ||||| |||||||| ||||||||||| |||| Sbjct 1097 ATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 1156 Query 26769 TTCC 26772 | || Sbjct 1157 TCCC 1160 >seq40249 Length=153482 Score = 506 bits (560), Expect = 6e-139 Identities = 702/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || |||||||| |||||||| || | |||||||| || || | Sbjct 1342 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1283 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || |||| | | || ||| | |||||| | || ||||| || || || Sbjct 1282 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1223 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1222 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1163 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || ||||| || | | || | ||| || || || | ||||||||||||||| Sbjct 1162 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1103 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||||| | | || || ||||||||||| || || || ||| |||| ||| | Sbjct 1102 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1043 Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161 | ||||| ||| | || ||||| ||| || | |||||||||| || | | Sbjct 1042 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 983 Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 || || ||| | || ||||| |||||||||| |||| || | | || ||| || Sbjct 982 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 923 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | || || | || ||||| |||||| |||||| |||||||| || ||| Sbjct 922 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 863 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||||||| | |||||||| || || || || || || ||||||||| Sbjct 862 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 803 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 || || ||| ||||| ||||| || ||||| || | || || ||||||||| || Sbjct 802 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 743 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 |||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 742 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 683 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 || | || || ||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 682 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 623 Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 |||| || || || ||||| ||||| || || |||||| | |||||||| | || Sbjct 622 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 563 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641 |||||||||| || || || ||| | || || | ||||| | || ||||| || ||| Sbjct 562 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 503 Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701 ||||||||||| || || ||||| |||||||| ||| | | ||| | || ||| Sbjct 502 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 443 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761 ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||||| Sbjct 442 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 383 Query 26762 CATAACTTTCCACTTGACTTAGC 26784 || ||||| || || ||| |||| Sbjct 382 CACAACTTCCCTCTAGACCTAGC 360 >seq10 Length=17599535 Score = 80.6 bits (88), Expect = 8e-11 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| ||||||||| | ||||||| || || || || || || |||||| Sbjct 16803128 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCCGGCTGAGCACAACATTCTTATGCAC 16803187 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 ||||| || || ||||| | ||| || ||| |||| | | || || |||| | Sbjct 16803188 CCATTTCACATATTAGGTGTAGTTGGTGTATTCAGTGGTTCCTTATTTAGTGTTATGTAT 16803247 Query 26399 GGAAGTTTGGTTACTTC 26415 || |||||| ||||| Sbjct 16803248 GGTTTTTTGGTAACTTC 16803264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146656271108376