Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq40249 567 2e-157 seq24705 538 1e-148 seq10 118 3e-22 >seq40249 Length=153482 Score = 567 bits (628), Expect = 2e-157 Identities = 726/996 (73%), Gaps = 6/996 (1%) Strand=Plus/Plus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 |||| |||| ||||| || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct 350 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 409 Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||||||| |||||||| | | ||| |||||||| || | | || | || Sbjct 410 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 469 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364 ||| ||||| || ||||| || || || || || || ||||||||||| || || | Sbjct 470 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 529 Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424 || |||| ||| || | || || ||||||| || | ||||||||||||| ||| Sbjct 530 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 589 Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484 |||||| || |||||||| |||||||| | || ||||| || || ||||| || ||||| Sbjct 590 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 649 Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544 ||| || |||||||| ||||| |||||| | || || | || ||| | | || Sbjct 650 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 709 Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604 ||||| | || | |||||| || | | |||||||||||| || | | || Sbjct 710 GGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCC 769 Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664 |||||||| ||||| ||||| | |||||| || || |||||||| || ||||| || || Sbjct 770 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 829 Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724 ||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| || Sbjct 830 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 889 Query 5725 ACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTG 5783 |||||| || || | ||||| | || || || | |||| || || ||||| || |||| Sbjct 890 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTG 948 Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843 ||||||| || |||||| || ||||| || | | | ||||||||||||| | || | Sbjct 949 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 1008 Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903 ||| ||| || | ||||| | ||||| | || | |||| || || || || | Sbjct 1009 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 1068 Query 5904 TGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 |||| ||||||||||| | ||| || ||||||||||| || || || || || ||||| Sbjct 1069 TGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGATCGGGTAAAAATGCAAACCAAT 1126 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || || | || | || ||| ||||| || || |||||||| || || |||||||| Sbjct 1127 AGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCC 1186 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | || |||||||| || || || || || ||||| || ||||| | |||||| | || Sbjct 1187 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1246 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141 ||| | | ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 1247 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1306 Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| | || ||||| | ||||| |||||| Sbjct 1307 AAGACGGTTTTCAGTACTAGTTATCCAGTTACAGAA 1342 >seq24705 Length=1162 Score = 538 bits (596), Expect = 1e-148 Identities = 707/973 (73%), Gaps = 5/973 (1%) Strand=Plus/Minus Query 5207 GGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGG 5266 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | | Sbjct 1160 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGGTTAGCACGGTTGATG 1101 Query 5267 ACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGACTGATTGAAGTTA 5326 | ||| |||||||| || | | ||| | ||||| || || || ||||| || Sbjct 1100 ATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAATTG 1041 Query 5327 AAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACG 5386 || || || || || ||||||||||| || || | || || | ||| || | || Sbjct 1040 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCTACT 981 Query 5387 ACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGG 5446 || ||||||| ||||| |||||| |||||| ||| ||||| || |||||||| ||| Sbjct 980 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 921 Query 5447 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGG 5506 ||||| | || ||||| || |||||||| || ||||| ||||| |||||||||||||| Sbjct 920 AAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGA 861 Query 5507 CCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAA 5566 || ||||| || || | || ||| | |||| ||||| | | | | | ||| Sbjct 860 CCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGACAAACTA-GAA 802 Query 5567 GTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCG 5626 || || | | |||||||||||| || | | || |||||||| ||||| ||||| Sbjct 801 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCT 742 Query 5627 AGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTA 5686 | |||||| || || |||||||| || ||||| || ||||||||||| | ||||||||| Sbjct 741 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 682 Query 5687 AAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTAT 5746 |||||||||||||| || | ||||||||||||| || ||||| || || | |||||| Sbjct 681 AAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGGTAA 622 Query 5747 ACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGG 5805 | || || || | ||||| | || ||||| || ||||||||||| || |||||| || Sbjct 621 ATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGG 563 Query 5806 TCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAA- 5864 ||||| || | | | ||||||||||||| | || |||| ||| || | ||||| Sbjct 562 ACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAG 503 Query 5865 TAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGAT 5924 |||||| ||| | || | || | || || || |||||||| | ||| ||||| | | Sbjct 502 TAAGGA-GTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAG 444 Query 5925 TGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGG 5984 || |||||||| || || || ||||| || || || || || | || | || | Sbjct 443 ATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGGATAATAG 384 Query 5985 CTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGT 6044 | || || || || ||||||||||| |||| ||| || | || || ||||| || || | Sbjct 383 CACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCAT 324 Query 6045 CGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGA 6104 | || || ||||| || ||||| | ||| || | |||||| ||| ||||||||| || | Sbjct 323 CAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATA 264 Query 6105 GTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAA 6164 | || ||||| || ||||| ||||| || | || || || || | |||||||| | Sbjct 263 AGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTA 204 Query 6165 CCCAGTCACAGAA 6177 ||||| ||||| Sbjct 203 TCCAGTTGCAGAA 191 >seq10 Length=17599535 Score = 118 bits (130), Expect = 3e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 5471 TGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGA 5530 ||||| | |||||||| || |||||||| ||||| |||||| |||| | | ||| | Sbjct 16803357 TGAGCAGTTACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTATAACTTTCGTTAGCA 16803298 Query 5531 GAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCA 5590 || | || |||| | ||| | |||||| || | | |||| |||| || Sbjct 16803297 GATTCATTTTTTGTGGTTTTCCTAATTAAACTAGAAGTTACCAAAAAACCATACATAACA 16803238 Query 5591 GCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGG 5650 || || | |||| |||||| ||| | ||||| | ||||| || || |||||||| Sbjct 16803237 CTAAATAAGGAACCACTGAATACACCAACTACACCTAATATGTGAAATGGGTGCATAAGA 16803178 Query 5651 ATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 5700 || ||||| || ||| ||||||| | ||||||||| |||||||||||||| Sbjct 16803177 ATGTTGTGCTCAGCCGGGAATACAATCATAAAGTTGAAAGTACCAGAGAT 16803128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152576640074214