Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq40249 571 2e-158 seq24705 508 2e-139 seq10 100 9e-17 seq2 84.2 7e-12 >seq40249 Length=153482 Score = 571 bits (632), Expect = 2e-158 Identities = 726/999 (73%), Gaps = 0/999 (0%) Strand=Plus/Plus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| ||| |||||||||||||| || ||||| ||||||||||| Sbjct 344 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 403 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 |||||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 404 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 463 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616 |||||| ||||| || ||||| || || || || || || ||||||||||| | Sbjct 464 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 523 Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676 || | ||| |||| ||| || | || |||||||| || | ||||||||||||| Sbjct 524 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 583 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 ||| ||| || || |||||||| |||||||| | || ||||| || || ||||| || Sbjct 584 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 643 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 |||||||| || || ||||||||||| |||||| | || || | || ||||||| Sbjct 644 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 703 Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856 | || ||||| | || | ||||| || | | || ||||||||| |||| Sbjct 704 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 763 Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916 | || |||||||| || || ||||| | ||| || || || |||||||| || ||||| Sbjct 764 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 823 Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976 || ||||| || |||| |||||| |||||||| || || || || |||||||||||||| Sbjct 824 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 883 Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 ||| ||||| ||||| |||| ||||||| ||||| |||||| || ||||||||||| Sbjct 884 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 943 Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096 |||||||| || ||| ||||| || | ||| || || | ||||||||||||| | Sbjct 944 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1003 Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156 || |||| ||| | | || | | |||||| | ||||| |||| ||| || || Sbjct 1004 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1063 Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216 |||||| || | ||| || || | || ||||||||||||||| ||||| || || | ||| Sbjct 1064 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 1123 Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276 || || ||| | || | || || ||||| || || |||||||| || || | | Sbjct 1124 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1183 Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || Sbjct 1184 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1243 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | ||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 1244 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1303 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || ||||| | ||||| || | ||||| ||| || Sbjct 1304 GTAAAGACGGTTTTCAGTACTAGTTATCCAGTTACAGAA 1342 >seq24705 Length=1162 Score = 508 bits (562), Expect = 2e-139 Identities = 693/966 (72%), Gaps = 1/966 (0%) Strand=Plus/Minus Query 25463 GAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAA 25522 ||||||||||||| || ||||| || ||||| |||||||| || | || |||||||| | Sbjct 1162 GAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGGTTAGCACGGTTGA 1103 Query 25523 GAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGT 25582 || ||||||||||| | || | || | |||||| || || || ||||| | Sbjct 1102 TGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAAT 1043 Query 25583 TAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAG 25642 | || || || || || ||||||||||| | || | ||| || | ||| || | Sbjct 1042 TGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCTA 983 Query 25643 TGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACT 25702 || ||||||||||||| |||||| |||||| ||| || || || |||||||| | Sbjct 982 CTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATT 923 Query 25703 GGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTT 25762 ||||||| | || ||||| || |||||||| || ||||| ||||| || ||||| |||| Sbjct 922 GGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTT 863 Query 25763 GGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGG 25822 | || ||||| || || | || ||||||| |||| ||||| | | || || Sbjct 862 GACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGACAAACTAG- 804 Query 25823 AAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACAC 25882 |||| || | | || ||||||||| |||| | || |||||||| || || |||| Sbjct 803 AAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACAC 744 Query 25883 CGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAAT 25942 | | ||| || || || |||||||| || ||||| || ||||| || |||| |||||| | Sbjct 743 CTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGT 684 Query 25943 TGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGT 26002 ||||||| || || || || | ||||||||||||||| || || ||||| |||| ||||| Sbjct 683 TGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGGT 624 Query 26003 AGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACG 26062 | | ||||| |||||| || ||||||||||| |||||||| || ||| ||||| | Sbjct 623 AAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAG 564 Query 26063 GCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGA 26122 | | ||| || || | ||||||||||||| | || |||| ||| | | || | Sbjct 563 GACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAA 504 Query 26123 TGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGG 26182 | |||| | ||||| || | ||| || ||||| || || |||||||| || | | Sbjct 503 GTAAGGAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAG 444 Query 26183 TTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTG 26242 |||||||||||| |||||||| ||||| | ||||| || ||| | |||| || | Sbjct 443 ATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGGATAATAG 384 Query 26243 CCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCAT 26302 | || ||||| || ||||||||||| ||||| | || || ||||||||||||||||||| Sbjct 383 CACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCAT 324 Query 26303 CTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAA 26362 | ||||| || ||||| ||||| | || || || | |||| | | ||| || || | Sbjct 323 CAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATA 264 Query 26363 GTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAA 26422 | ||||||||| | || || ||||| || | || || || || | || || || | Sbjct 263 AGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTA 204 Query 26423 CCCAGT 26428 ||||| Sbjct 203 TCCAGT 198 >seq10 Length=17599535 Score = 100 bits (110), Expect = 9e-17 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25729 TGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGA 25788 ||||| | |||||||| || || ||||||||||| |||||| |||| | | ||| | Sbjct 16803357 TGAGCAGTTACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTATAACTTTCGTTAGCA 16803298 Query 25789 GATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCA 25848 |||||| || |||| | ||| | ||||| || | | || | |||| || Sbjct 16803297 GATTCATTTTTTGTGGTTTTCCTAATTAAACTAGAAGTTACCAAAAAACCATACATAACA 16803238 Query 25849 GCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGG 25908 ||||| | |||| |||||| || | ||||| | || || || || |||||||| Sbjct 16803237 CTAAATAAGGAACCACTGAATACACCAACTACACCTAATATGTGAAATGGGTGCATAAGA 16803178 Query 25909 ATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAAT 25958 || ||||| || ||| | || |||| |||||| |||||||| || || || Sbjct 16803177 ATGTTGTGCTCAGCCGGGAATACAATCATAAAGTTGAAAGTACCAGAGAT 16803128 >seq2 Length=27864329 Score = 84.2 bits (92), Expect = 7e-12 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 25935 CATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 25994 |||||| |||||||| || || || || ||||||||||||||||| || || | ||| || Sbjct 14826922 CATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAATCTTCTTTGACC 14826981 Query 25995 AAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGC 26030 || ||||||| ||||| |||||| || ||||| Sbjct 14826982 AATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGC 14827017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151920953613924