Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 seq1 89.7 4e-13 >seq3 Length=31725688 Score = 102 bits (112), Expect = 7e-17 Identities = 196/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 ||||||| | || || ||||| || || | | |||||||| || || || | || Sbjct 20592686 CACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 20592745 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 20592746 ATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 20592805 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 || || | ||| ||| | || | ||| || | ||| || |||||||| || || ||| Sbjct 20592806 ACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCAC 20592865 Query 29991 GTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047 || ||||| | ||||| ||||||||||| || ||||| || | ||| || Sbjct 20592866 ATAGAACTGCGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGG 20592922 Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 |||||| || | | ||||| |||| || || || |||||| |||| Sbjct 20592923 GTTCCAAGCAGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 20592970 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 29591320 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 29591379 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 29591380 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 29591439 Query 29997 CTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30053 ||| | ||| ||||||| |||||||| ||||| || | ||| || ||||| Sbjct 29591440 CTGTGCAAACA---TGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 29591496 Query 30054 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 || ||| || || || | || || || |||||| |||| Sbjct 29591497 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 29591538 >seq1 Length=28635137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||| ||||| | || | || || || ||||| |||||||||||| ||||| || || Sbjct 1752377 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCCAG 1752318 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||| || |||||||| | |||||||| Sbjct 1752317 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 1752258 Query 29997 CTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30056 |||| | ||||||| |||||||| ||||| || | ||| || ||||| || Sbjct 1752257 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 1752198 Query 30057 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 ||| || || || | || || || |||||| |||| Sbjct 1752197 CGACATTATAATCCGGCGATCGTCAGGATTGTTCTTGAT 1752159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408417158893277