Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq24705 607 9e-169 seq40249 603 1e-167 seq10 145 8e-30 >seq24705 Length=1162 Score = 607 bits (672), Expect = 9e-169 Identities = 709/952 (74%), Gaps = 9/952 (1%) Strand=Plus/Plus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| ||||| | || |||| ||||||||||| |||||||||||| ||| | | || Sbjct 214 TGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGC 273 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | || || || || || ||||| || || |||||||| ||||| |||||||| | Sbjct 274 AACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCG 333 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 || |||||| | ||||| | || ||||| ||||| || |||||||||||| | | || Sbjct 334 TGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATCCC 393 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 || ||| || || || | ||||| || || || |||||||| ||| || ||||||| Sbjct 394 TACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGA 453 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTA-TCGGAATCA 162820 |||||| || |||||||| |||| | || | || | |||| ||||| | || | Sbjct 454 GTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACT-CCTTACTTGGTGT-- 510 Query 162821 CAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGA 162877 ||| | | | |||||| ||||||||||| || ||| | |||||||||||||||| Sbjct 511 -AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 569 Query 162878 TCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTT 162937 | ||||||||| || || || || | || || ||||| |||||| | || ||| Sbjct 570 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTA 629 Query 162938 TCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACA 162997 | |||||||| || ||||| | |||||| | || || ||||||||||| |||| | Sbjct 630 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTA 689 Query 162998 TGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCG 163057 || | || ||||| || ||||||||||| || |||||||| || || ||| | || || | Sbjct 690 TGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 749 Query 163058 CAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTC 163117 | ||||||||||| || || || |||||||||||||| |||||| | || |||||| | Sbjct 750 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGT- 808 Query 163118 TTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAG 163177 || |||| ||||||||||| | || || || | ||||| || || || ||||| | Sbjct 809 TTGTCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGG 868 Query 163178 AAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATG 163237 |||| ||||| || ||||| ||||||||||| || ||||| || || |||||||| |||| Sbjct 869 AAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATG 928 Query 163238 CATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCA 163297 | |||||||||||| ||||| | ||||||||| | ||||| | ||||| || | | Sbjct 929 CTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAA 988 Query 163298 TCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCA 163357 ||||||||||||| | ||| | |||||||| |||||||| || |||||||| |||| Sbjct 989 TCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCA 1048 Query 163358 ACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACA 163417 ||||||| || ||||| ||| || ||| ||||||||| |||||| | ||| Sbjct 1049 ACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACC 1108 Query 163418 GAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCC 163469 | || |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1109 GTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCC 1160 >seq40249 Length=153482 Score = 603 bits (668), Expect = 1e-167 Identities = 738/1001 (74%), Gaps = 22/1001 (2%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGT--TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGA 162559 ||||||||| | || ||| ||| || || | || | || ||||| ||||| |||| Sbjct 1339 TGTAACTGGATAACT--AGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGA 1282 Query 162560 TGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCAC 162616 |||||||| ||| | | ||| |||| | || || || ||||||||||| || | Sbjct 1281 TGATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTATTATCGCATTCATTGCTGCTC 1225 Query 162617 CTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACA 162676 ||||||| ||||| |||||||| | ||||||||| | || || ||||| || || |||| Sbjct 1224 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACA 1165 Query 162677 ACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTA 162736 | || || || ||||| | |||||| ||| ||||||||| | || || || || | Sbjct 1164 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 1105 Query 162737 TCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAG 162796 |||||||||| ||| | ||||||| ||| | || || ||||| |||| |||| | | Sbjct 1104 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 1045 Query 162797 TCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTT 162853 | | ||||| | | || | ||| | | | |||||| ||||||||||| || Sbjct 1044 TTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTT 988 Query 162854 ACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCAT 162913 ||| | ||||||||||||||||| ||||||||| || || || || | || || Sbjct 987 TCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 928 Query 162914 TCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTG 162973 ||||| |||||| |||| || | |||||||| ||| ||||| | |||||||| | Sbjct 927 CTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAG 868 Query 162974 GTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGC 163033 | || ||||||||||| |||| ||| | || ||||| || ||||||||||| || |||| Sbjct 867 GAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGC 808 Query 163034 ACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGC 163093 |||| || || ||| | || || || ||||||||||| || || || ||||||||||||| Sbjct 807 ACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGC 748 Query 163094 ACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACT 163153 | |||||| | || |||||| | | ||||| ||||| || || | || || || Sbjct 747 ATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 688 Query 163154 ACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACT 163213 | ||||| | ||||| ||||||||||| |||||||||||||| |||||||| || || | Sbjct 687 AAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATT 628 Query 163214 TTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCC 163273 |||| || ||||||||||| ||||| ||||||||| || ||||| | || |||||| Sbjct 627 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCT 568 Query 163274 TTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCAT 163333 | || || | || || || | || ||||| ||||| | ||| | |||||||| | Sbjct 567 TAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTT 508 Query 163334 TCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGA 163390 ||||||| || |||||||| ||||||||||| || ||||| ||| || || | Sbjct 507 TCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTA 451 Query 163391 TTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGC 163450 || ||||||||| ||||| ||||| | || |||||||||||||||||||| || | Sbjct 450 TTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAAC 391 Query 163451 GTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 ||||||||||||||||||| || ||||| ||||||| |||| Sbjct 390 GTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 350 >seq10 Length=17599535 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| ||| | || |||| || ||||||||||| || |||||| Sbjct 16803128 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCCGGCTGAGCACAACATTCTTATGCAC 16803187 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || || | || || | ||||||||| ||||||| | ||||||| |||| | Sbjct 16803188 CCATTTCACATATTAGGTGTAGTTGGTGTATTCAGTGGTTCCTTATTTAGTGTTATGTAT 16803247 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 |||| | | || |||||| | | || || |||| || | | || || ||| | Sbjct 16803248 GGTTTTTTGGTAACTTCTAGTTTAATTAGGAAAACCACAAAAAATGAATCTGCTAACGAA 16803307 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCA 163205 |||||| ||||| ||||||||||| |||||||||||||| ||||||| Sbjct 16803308 AGTTATAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAACTGCTCA 16803357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552806536123560