Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 242 7e-59 seq6 196 9e-45 >seq2 Length=27864329 Score = 242 bits (268), Expect = 7e-59 Identities = 460/673 (68%), Gaps = 37/673 (5%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||| || || | ||| ||| ||| ||||| ||| || | Sbjct 22153672 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCGCTCCTCCGATAG 22153613 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || | || ||||| || ||| || ||||| | ||| | ||||||||| Sbjct 22153612 CTTCGTCCTCAA---CAAGGTATAGATCAGGCACGCGAAGTCGCAGTGAAGGCCTTCGTC 22153556 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 ||| ||| ||| ||||||||||| ||| || ||||||| ||| | || |||||||| Sbjct 22153555 CCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCTCGCTTCTTGAGCCA 22153496 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || ||||| |||||| || || Sbjct 22153495 GAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCACGCGAAGGCCACGAT 22153436 Query 48280 CCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA-GGA--------AAGCGCCCAGTC 48330 ||||||| ||||| |||||||||||| || ||| ||||| | Sbjct 22153435 CCTCTCTGCGAAA-----------GTCTGAGATCCATCGATCCACTTCAAG-GCCCATTG 22153388 Query 48331 TGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACC 48390 ||||||||| || ||| || || ||||| || || |||||||| | | | ||| | Sbjct 22153387 GGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTC-CT 22153329 Query 48391 TG-CGTCCGCAACATAGGTAGTGAGCA----GCTTTGCGTACATCTCAGAGTGCACATTC 48445 || |||| | |||||| |||| ||| ||||||||| ||||| | |||| Sbjct 22153328 TGTTGTCCTTGATGTAGGTATCTAGCAAGAGGCT----GTACATCTCCGAGTGGATATTC 22153273 Query 48446 TCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAG 48505 || || ||||||||||||||||||||||| | ||||| | |||||||| || | | Sbjct 22153272 TCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACCTGCACGTCGGACATG 22153213 Query 48506 AATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACA 48565 || | |||||||| ||| || || || || || || |||||||| ||||| Sbjct 22153212 AACCGGGAGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCGAGGACG 22153153 Query 48566 TGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCCCTGTACGTCTTTG 48622 ||||| | ||| ||||||||| || | |||| | | |||| | | ||||| | Sbjct 22153152 TGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGGTTGGTCTCCCAGTCGCGGGTGTCTTGG 22153093 Query 48623 CCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCAT 48682 ||||| ||||| || | ||||||||||| || ||||| |||||||| |||| Sbjct 22153092 GAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAG 22153033 Query 48683 ATGTCCGGATAGT 48695 || | || |||| Sbjct 22153032 ATCTGAGGGTAGT 22153020 >seq6 Length=26286742 Score = 196 bits (216), Expect = 9e-45 Identities = 440/657 (67%), Gaps = 8/657 (1%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||| || || | |||||| ||| ||||| ||| | | | Sbjct 22599746 AAACTCCCTCTCGATCTCCACCGCGTCGCAGACAATCGACTTCACGCGCTCCTCCGTGAG 22599687 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || | | ||||| || |||||| ||||| | ||| | ||||||||| Sbjct 22599686 CTTCGTCCTCAATAGAGT---ATAGATCAGGCAGGCGAAGTCGCAGTGAAGGCCTTCGTC 22599630 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | | ||||||||||| | ||| ||||||| ||| | || || ||||| Sbjct 22599629 TCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCCTCGCTTCTTCAGCCA 22599570 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || ||||| || ||||| || Sbjct 22599569 GAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAAGCAAACGCCACGAT 22599510 Query 48280 CCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| |||||| | | || ||| |||||| | ||||| | ||||||| Sbjct 22599509 CCTCTCGGCGAAAGTCTGAGATCC-GTC---GATCCACTTCATGGCCCATTGGGCCTTCT 22599454 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 || || ||| || || || || || || |||||||| | | | ||| |||| Sbjct 22599453 TCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGGTGGTCCCTCTCTTTGTTGTCCT 22599394 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || || |||||| ||||||||| ||||| | |||||| || ||||||| Sbjct 22599393 TGATGTACGTGTCGAGCAGGAGGCTGTACATCTCTGAGTGGATATTCTCAATCGCGATCT 22599334 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCA 48518 |||||||||||||||| | ||||| | || ||||| || | ||| | | Sbjct 22599333 GGAACCCGTAGAAGGCACGCGCCTCGGAGACTTGCACGTCGGACATGAACCGGGAGGCGA 22599274 Query 48519 GATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAAT 48578 ||||||| || || || || || || || |||||||| ||||| ||||| | ||| | Sbjct 22599273 GATTCTCTAAAACGATTCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGT 22599214 Query 48579 GGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTT 48638 ||||||| || | ||||| | |||| | | ||||| || || ||||||| Sbjct 22599213 GGCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGAGTGTCTTGCGAGAGATCGACTTCTT 22599154 Query 48639 CCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 | | |||||||| || || || || |||||||| |||| || | ||| |||| Sbjct 22599153 CGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTCCCAGATCTGCGGTTAGT 22599097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931064134204160