Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 145 1e-29 seq6 141 2e-28 >seq2 Length=27864329 Score = 145 bits (160), Expect = 1e-29 Identities = 390/577 (68%), Gaps = 22/577 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| |||||||||||| || | || || Sbjct 22153031 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 22153090 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACG---AGCAGCATTTTCTCAA 25592 || | |||| || |||| | | | | | ||| |||| ||| || || |||| Sbjct 22153091 TCCCAAGACACCCGCGACTGGGAGAC-CAACCTCAACGACGGCGAGCGCCACTTCATCAA 22153149 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || ||||||||| | | Sbjct 22153150 ACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCCCG 22153209 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCA 25711 |||| || |||||| | ||||| ||| |||||||| |||||||| || | Sbjct 22153210 GTTCATGTCCGACGTGCAGGTCTCCGAGGCGC-GTGCCTTCTACGGGTTCCAGATCGCGA 22153268 Query 25712 TCGAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTT-CT-GATGACGTACATTACAGACG 25768 | || ||| | ||||| ||| |||| ||| ||| || ||| || ||||| | ||| Sbjct 22153269 TTGAGAATATCCACTCGGAGATGTACAGCCT--CTTGCTAGAT-ACCTACATCAAGGACA 22153325 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || | || || | || || ||| ||| || || || || ||||| Sbjct 22153326 ACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAAGAAGG 22153385 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | | |||||| ||||||||||| | | | || || || | ||| || | || Sbjct 22153386 CCCAATGGGCCTTGAAGTGGATCGATGGATCTCAG----ACTTTCGCAGAGAGGATCGTG 22153441 Query 25888 GCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGC 25945 ||||| || ||| ||||| || ||||| ||| ||| || ||| |||||||||||| Sbjct 22153442 GCCTTCGCGTGC-GTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CCATCTTCTGGC 22153499 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || ||| |||||| ||||| ||| ||||||||||| ||| |||||| Sbjct 22153500 TCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGGGACG 22153559 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 | || || ||| | || || || |||||| |||| || Sbjct 22153560 AAGGCCTTCACTGCGACTTCGCGTGCCTGATCTATAC 22153596 >seq6 Length=26286742 Score = 141 bits (156), Expect = 2e-28 Identities = 382/575 (66%), Gaps = 21/575 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| ||||||||||||||| | ||||| Sbjct 22599108 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTCGATCTC 22599167 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACG---AGCAGCATTTTCTCAAG 25593 | | |||| || |||| | ||| ||| |||| ||| || || |||| Sbjct 22599168 TCGCAAGACACTCGCGACTGGGAGAATCT---CAACGACGGAGAGCGCCACTTCATCAAA 22599224 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||||| | | Sbjct 22599225 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTTTTAGAGAATCTCGCCTCCCGG 22599284 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCAT 25712 |||| || ||||| | ||||| ||| |||||||| |||||||| || || Sbjct 22599285 TTCATGTCCGACGTGCAAGTCTCCGAGGCGC-GTGCCTTCTACGGGTTCCAGATCGCGAT 22599343 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || ||| | ||||| ||| |||| || || ||| | |||||||| | ||| Sbjct 22599344 TGAGAATATCCACTCAGAGATGTA---CAGCCTCCTGCTCGACACGTACATCAAGGACAA 22599400 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | ||||| || | || || | || || || ||| || || || || |||||| Sbjct 22599401 CAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAAGAAGGC 22599460 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||||||||||||||| || | | || || || | |||| || | || | Sbjct 22599461 CCAATGGGCCATGAAGTGGATCGACGGATCTCAG----ACTTTCGCCGAGAGGATCGTGG 22599516 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 | |||||| ||||| || ||||| ||| ||| || ||| ||||||||||||| Sbjct 22599517 CGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CCATCTTCTGGCTG 22599575 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| || | ||| ||||||||| | ||| | ||||| Sbjct 22599576 AAGAAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAA 22599635 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 || || ||| | || || ||||||||| |||| || Sbjct 22599636 GGCCTTCACTGCGACTTCGCCTGCCTGATCTATAC 22599670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928377486570560