Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 1e-13 seq1 84.2 2e-11 seq3 82.4 6e-11 >seq9 Length=37155481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || |||||||| || || || ||||| || ||| |||| Sbjct 16960927 ATGCAAATCTTCGTTAAGACATTAACCGGAAAGACTATTACTTTGGAGGTGGAGAGTTCA 16960868 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || ||| ||||| ||||| | || ||||| Sbjct 16960867 GATACTATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAG 16960808 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| ||||| || | || ||| | || |||| || |||||| Sbjct 16960807 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTATAAC 16960748 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || |||||||| ||| |||| || | |||| ||||| || Sbjct 16960747 ATTCAGAAGGAGTCTACTCTCCACTTGGTCTTGCGTCTACGTGGAGGTAT 16960698 >seq1 Length=28635137 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| ||||| ||||| | || || || ||||| |||||||| || || || Sbjct 22221562 AAAATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGAGGCTTATCTTCGCTGGGAAG 22221503 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||||||||| | || |||| ||||| |||||||| || || ||||| || ||| Sbjct 22221502 CAATTGGAAGATGGCAGGACCTTGGCTGATTACAACATTCAGAAGGAGTCTACGCTTCAC 22221443 Query 28758 ATGGTATTAAGATTACGAGGAGGGAT 28783 |||| || | |||| ||||| || Sbjct 22221442 TTGGTCTTGCGTCTACGTGGAGGCAT 22221417 >seq3 Length=31725688 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| ||||||||||| | || ||| || ||||| || ||||| || |||||| Sbjct 13311284 AAAATCCAGGACAAAGAGGGTATTCCTCCAGACCAGCAGAGGCTGATCTTCGCTGGCAAA 13311343 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 || | || ||| | ||| |||| || |||||||| || |||||||| ||||| ||| Sbjct 13311344 CAGCTTGAGGATGGTCGTACTTTGGCTGACTATAACATCCAGAAAGAATCAACTCTTCAC 13311403 Query 28758 ATGGT 28762 |||| Sbjct 13311404 CTGGT 13311408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425196124189371