Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq40249 688 0.0 seq24705 659 0.0 seq27683 203 4e-47 seq13684 176 5e-39 seq3029 143 3e-29 seq10 127 2e-24 seq34986 102 9e-17 seq5 102 9e-17 seq38010 82.4 8e-11 >seq40249 Length=153482 Score = 688 bits (762), Expect = 0.0 Identities = 751/996 (75%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | || || || || ||||| ||||| |||| ||||| || || || Sbjct 1342 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1283 Query 160936 ATGATTCC---CTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCT 160992 ||||| || || ||| ||| || || ||| | | ||| || ||| ||| |||| Sbjct 1282 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC---GCATTCATTGCTGCT 1226 Query 160993 CCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAAC 161052 || || || || || || || ||||||||||| || |||| || || | || |||||| Sbjct 1225 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 1166 Query 161053 AACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCC 161112 || || || || ||||| |||| ||| ||||| ||||| ||| |||| || ||||| Sbjct 1165 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCG 1106 Query 161113 ATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 161172 ||||||||||| ||| | || |||||||| |||||||||||||||| |||| || Sbjct 1105 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 1046 Query 161173 GTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 161232 || | ||||| | |||| | | ||| ||||||||||||||||||||| || | Sbjct 1045 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 986 Query 161233 CGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 161292 |||||||| ||||||||||||||| || ||||| || |||||||| || || || | | Sbjct 985 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 926 Query 161293 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 161352 || || ||| || |||| || | |||||||| ||| ||||||| |||||||| || Sbjct 925 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 866 Query 161353 ATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCAC 161412 ||||||||||| ||||||| ||| |||| ||||| || |||||||||||||| |||||| Sbjct 865 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 806 Query 161413 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 161472 || || || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| Sbjct 805 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 746 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 ||||| |||| || ||| || | | |||||||| ||||| || || || | Sbjct 745 GGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 686 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTC 161592 ||||||| ||||||||||||||||| || |||||||| || ||||| ||||| || || Sbjct 685 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 626 Query 161593 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTT 161652 || || |||| |||||||| ||| |||||||| || || || | || |||||| | Sbjct 625 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 566 Query 161653 GCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 161712 || |||||||| || || || || ||||| ||||| | || | || || ||||| ||| Sbjct 565 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 506 Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| ||||||||||| |||||||| || | ||||||||||| || ||||| || Sbjct 505 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 446 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAAT 161832 || ||||| || || | ||||||||| ||||| |||||||| ||||| || || ||| Sbjct 445 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 386 Query 161833 GCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 161868 ||||||||||||||||| ||||| ||||||| |||| Sbjct 385 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 350 Score = 536 bits (594), Expect = 1e-147 Identities = 729/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||| ||||||||||| || |||||||| Sbjct 31935 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 31994 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| | ||| | ||||||||| | || || || || || Sbjct 31995 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32054 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT 162296 || || ||||||||||| ||| | || ||||||||| | || ||| || ||| | Sbjct 32055 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32114 Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356 || || |||||||||||||| || | | | | |||||| | || | || |||||| Sbjct 32115 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32174 Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416 ||||| | ||||| || || | || ||||| ||| | || || || ||| ||||||| Sbjct 32175 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32234 Query 162417 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 162476 || |||||||| || || ||| | |||||||| ||| | || || |||||||| || ||| Sbjct 32235 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32294 Query 162477 -CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGT 162535 || || | | || ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 32295 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32353 Query 162536 TAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGG 162595 | ||| ||||| || ||||| | || ||||| |||||||| || || || || Sbjct 32354 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32413 Query 162596 GGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAA 162655 || || || || || |||||| | ||||| |||||||||| ||||| ||||| | || Sbjct 32414 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32473 Query 162656 TCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCA 162715 || ||||| |||||||| || || ||| | || || | || || | | |||||||| Sbjct 32474 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 32533 Query 162716 TGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGC 162775 ||| | || || |||||||| | | |||||||| || ||||| || || || Sbjct 32534 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 32593 Query 162776 ATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTC 162835 ||| || | || || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 32594 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 32653 Query 162836 ACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGT 162895 ||| || || || |||||||| || || |||||||| |||||||||||| | ||||| Sbjct 32654 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 32713 Query 162896 TCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCG 162955 || || | ||| | |||| ||| || | || | | || || ||| | || || || Sbjct 32714 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 32773 Query 162956 TGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTT 163015 ||| || ||||| || || || ||| | ||||| || ||||| || || |||||||| || Sbjct 32774 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 32833 Query 163016 CTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCA 163075 |||||| || || |||||| | || ||||| |||| || ||| | || | || || Sbjct 32834 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 32893 Query 163076 ACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 |||||||| ||| || | |||||||| ||||| | ||| | || |||||||| Sbjct 32894 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32947 >seq24705 Length=1162 Score = 659 bits (730), Expect = 0.0 Identities = 733/974 (75%), Gaps = 3/974 (0%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||||| | || ||||| || || || ||||| | || |||||||| || || Sbjct 191 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 250 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | ||| || || || |||||| | | ||| || Sbjct 251 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 309 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || |||||||| || || ||||||| | | ||||||||||| Sbjct 310 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 369 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 || |||||||||||| |||||||| ||||| || ||||| ||||||| ||||| || Sbjct 370 TATTATCTCTGGTGCTATTATCCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 429 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| ||| | | || || ||| | ||||| |||||||||| | || |||| Sbjct 430 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 489 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | |||| | | |||| | | ||| ||||||||||||||||||||| || ||| Sbjct 490 TCTACACTCCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 549 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 |||||| ||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 550 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 609 Query 161295 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 161354 || ||| || | || ||| | |||||||| || ||||||| |||||| | || || Sbjct 610 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 669 Query 161355 CTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCC 161414 ||||||||| ||||||| ||| |||| ||||| || |||||||||||||| |||||||| Sbjct 670 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 729 Query 161415 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 161474 || || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| || Sbjct 730 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 789 Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534 ||| |||| || || | | | || | ||||| || ||||| || || || | || Sbjct 790 TTCTTTGGTAACTTC-TAGTTTGTCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGG 848 Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594 |||||| || |||||||| ||||| || || || || || ||||| || || || || || Sbjct 849 TTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGG 908 Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654 || | || |||||||| ||| ||||||||||| || || | ||||||||| | || Sbjct 909 CCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGC 968 Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714 |||||||||||| || || |||||||||||||| | || | || || ||||| ||||| Sbjct 969 TGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 1028 Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774 ||| ||||||||||| |||||||| ||| | ||||||||||| ||| ||||| || || Sbjct 1029 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATAC 1088 Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGC 161834 ||||| || | ||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct 1089 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGC 1148 Query 161835 TCACAACTTCCCTC 161848 |||||||||||||| Sbjct 1149 TCACAACTTCCCTC 1162 >seq27683 Length=354 Score = 203 bits (224), Expect = 4e-47 Identities = 250/342 (73%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 162516 GGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGG 162575 ||||| |||||||| || ||| ||| || ||||| ||||| |||| ||||| ||| Sbjct 352 GGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGG 293 Query 162576 TTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGG 162635 ||||| || ||| || || || ||||| || || |||||| | || ||| ||||||| Sbjct 292 TTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTTCCAAGGA 233 Query 162636 TTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGT 162695 || ||||| |||||| | || || ||||| |||||||| || || || | | |||| Sbjct 232 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCG 173 Query 162696 GCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAA 162755 || |||| | ||||||||||||| ||| || ||||| || || | || || || || Sbjct 172 GCTCTGCTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGAT 113 Query 162756 CAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTT 162815 ||||| || || || ||| || | || || | |||||||| ||||| ||||| Sbjct 112 GGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTC 53 Query 162816 ACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTT 162857 ||||| |||||||| ||||| || || || ||| |||||||| Sbjct 52 ACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTT 11 >seq13684 Length=3594 Score = 176 bits (194), Expect = 5e-39 Identities = 196/262 (75%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 162868 GTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCG 162927 ||||||| |||||||||||||| ||||| ||||||| ||| | |||| ||| |||| | Sbjct 1 GTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTG 60 Query 162928 GTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTG 162987 | | |||| | ||||| || | ||||| || |||||||| || || ||| | |||| Sbjct 61 GCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTG 120 Query 162988 CGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGAC 163047 | || ||||| ||||| |||||||| ||||| || || || |||||| | || || || Sbjct 121 CAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTA 180 Query 163048 TTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGG 163107 |||| || ||| | ||| | ||| || |||||||| || || | |||||||| |||| Sbjct 181 TTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGG 240 Query 163108 TCTTGCCAAGAGGCAACGCTCT 163129 | | ||| | || |||||||| Sbjct 241 TTCTACCACGTGGAAACGCTCT 262 >seq3029 Length=7874 Score = 143 bits (158), Expect = 3e-29 Identities = 181/246 (74%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||| | ||| ||||||||||||||||| || |||||||| || | || ||| Sbjct 247 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 188 Query 162189 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 162248 || ||||||| | ||| | ||||||||| |||| ||||| ||||| || || |||| Sbjct 187 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 128 Query 162249 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTA-CTGCGGCAGT 162307 ||||| || ||| | || ||||||||| | || ||| || ||||||| | || ||||| Sbjct 127 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCAGT 69 Query 162308 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 162367 |||||| || || | | | | || ||| | |||| |||||||| || || | || Sbjct 68 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCCGAAGCACA 9 Query 162368 AGGGGA 162373 ||| || Sbjct 8 AGGAGA 3 >seq10 Length=17599535 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 161353 ATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCAC 161412 ||||||||||| ||||||| ||| |||| |||| || |||||||||||||| |||||| Sbjct 16803128 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCCGGCTGAGCACAACATTCTTATGCAC 16803187 Query 161413 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 161472 || || || || | || |||| ||||| || | ||||| | || |||| ||| | Sbjct 16803188 CCATTTCACATATTAGGTGTAGTTGGTGTATTCAGTGGTTCCTTATTTAGTGTTATGTAT 16803247 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 |||| |||| || ||| | || | ||||||| |||| || || ||| | Sbjct 16803248 GGTTTTTTGGTAACTTCTAGTTTAATTAGGAAAACCACAAAAAATGAATCTGCTAACGAA 16803307 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCA 161582 |||| | ||||||||||||||||| || |||||||| || |||| || Sbjct 16803308 AGTTATAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAACTGCTCA 16803357 >seq34986 Length=93546 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| || |||||| ||| |||||||||| ||||||||||| || |||| | ||| Sbjct 33490 GTGCGACGACGACGTCTACGTCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTA 33549 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || | || ||| ||||| || ||| | || ||||| | || || Sbjct 33550 CTCTTGCCGTGCTGGTTCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGA 33609 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| |||||| ||||| || |||||||| || | || ||| |||| ||||| Sbjct 33610 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTG 33669 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 || |||||| ||| ||| | |||||||| ||| ||||| || Sbjct 33670 TGCGGCTTATCTTACTTTCGATGTTACCATTGAGACCCACAGAGAAGATGA 33720 >seq5 Length=23960834 Score = 102 bits (112), Expect = 9e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| ||||||||| ||| |||| ||||| || |||||||| ||| |||| | ||| Sbjct 8107149 GTGCGAAGACGACGTCTACGTCCTCGACGCTGCGGAGGAAGCAGGTATCGATTTGCCTTA 8107090 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| ||||| ||||| |||| || || || || ||| ||||||||||| | | || Sbjct 8107089 CTCATGCCGCGCAGGATCTTGCTCAAGCTGCGCAGGGAAAGTCGTCTCTGGCTTCATTGA 8107030 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 158480 ||| | |||||| |||| | ||||||||||| || Sbjct 8107029 CCAGACGGACCAGAGCTTCTTAGACGATGACCAGAT 8106994 >seq38010 Length=70015 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| ||||||||||| |||||||| || | ||||||||||| || ||| | || Sbjct 45327 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 45386 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 161820 || ||||| || || | ||||||||| ||||| |||||||| ||| Sbjct 45387 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 45434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547471621536840