Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq40249 542 9e-150 seq24705 531 2e-146 seq10 93.3 1e-14 >seq40249 Length=153482 Score = 542 bits (600), Expect = 9e-150 Identities = 715/986 (73%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 359 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 418 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 419 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 478 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 479 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 538 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 539 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 598 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || || ||||| || ||||| || || || Sbjct 599 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 658 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 659 TTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 718 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | | || ||||||||| |||| | || |||||||| Sbjct 719 GATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 778 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 779 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 838 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 839 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 898 Query 18374 TCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 |||| || || | | ||||| || | || || ||||||| || || || ||||| ||| Sbjct 899 ACCAATTGGGTAGATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGCTGAATATGCA 956 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||| |||||| || |||||||| || | ||||||||||||| | || ||||| ||| Sbjct 957 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAA 1016 Query 18492 GCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 18551 || | || | | |||||| | ||||| |||| ||| || || ||||| |||| | Sbjct 1017 CAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGC 1076 Query 18552 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 18611 || || || | || ||||||||||||||| ||||| || || | ||| || || ||| Sbjct 1077 CATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAA 1136 Query 18612 GACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGC 18671 | || | || || ||||| || || |||||||| || || | | ||| || ||||| Sbjct 1137 GTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGT 1196 Query 18672 TCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTA 18731 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | | Sbjct 1197 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAA 1256 Query 18732 GCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTG 18791 | |||||| || | | ||||||||| | || |||||||| || | ||| || ||||| Sbjct 1257 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTT 1316 Query 18792 TTTGTACTCGTAACCCAGTCACATAA 18817 | ||||| || | ||||| ||| || Sbjct 1317 TCAGTACTAGTTATCCAGTTACAGAA 1342 >seq24705 Length=1162 Score = 531 bits (588), Expect = 2e-146 Identities = 704/969 (73%), Gaps = 11/969 (1%) Strand=Plus/Minus Query 17847 GGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGT 17906 |||||||| ||||||||||| |||||||| ||||| | ||||||||||| | ||||| Sbjct 1160 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGGTTAGCACGGTTGATG 1101 Query 17907 ACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAATGGATTGGTTGAAG 17963 | |||||||| ||| | || | ||| | | | ||||| ||||||||||| Sbjct 1100 ATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA---GATTGGTTGAAA 1044 Query 17964 TTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAA 18023 ||||| ||||| || || ||||||||||| || || | || || | ||| || | Sbjct 1043 TTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCT 984 Query 18024 GTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATAC 18083 || |||||||||||||||||||| |||| | | ||||| || |||||||| Sbjct 983 ACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATAT 924 Query 18084 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCT 18143 |||||||| | || ||||| || |||||||| || ||||||||||| || ||||| ||| Sbjct 923 TGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCT 864 Query 18144 TGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAG 18203 || |||||||| || || | || ||| ||| ||||| ||||| || | || || Sbjct 863 TGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGACAAACTAG 804 Query 18204 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 18263 |||| || | | || ||||||||| |||| | || |||||||| || || ||| Sbjct 803 -AAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACA 745 Query 18264 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAA 18323 || | ||| || || || |||||||| || ||||| || || |||||||| | ||| || Sbjct 744 CCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAG 685 Query 18324 TTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGA 18383 ||||||||||| || || | ||||||||||||||| || || ||||| |||| ||| Sbjct 684 TTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGG 625 Query 18384 TAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCC 18441 |||| | ||||| || | || || ||||||| || || || ||||| |||||| ||||| Sbjct 624 TAAATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCC 567 Query 18442 ACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGC 18501 | || |||||||| || | ||||||||||||| | || ||||| ||| || | | Sbjct 566 AAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACAC 507 Query 18502 CGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGA 18561 | | | |||| | ||||| || | ||| || || || || ||||||||||| || | Sbjct 506 CAAGTAAGGAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAA 447 Query 18562 GGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGA 18621 | |||||||||||| |||||||| ||||| | ||||| || ||| | |||| | Sbjct 446 CAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGGATAA 387 Query 18622 TTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATAC 18681 | || || || || || ||||||||||| ||||| | || || |||||||||||||||| Sbjct 386 TAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATAC 327 Query 18682 CATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTA 18741 |||| || || || ||||| ||||| | || || || | |||| | | || |||||| | Sbjct 326 CATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCA 267 Query 18742 AAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCG 18801 | | | ||||||||| | || || ||||| || | ||| || || || | || || | Sbjct 266 ATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAG 207 Query 18802 TAACCCAGT 18810 | | ||||| Sbjct 206 TTATCCAGT 198 >seq10 Length=17599535 Score = 93.3 bits (102), Expect = 1e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 18111 TGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGA 18170 ||||| | ||||| || || || ||||||||||| || ||| |||| | | ||| | Sbjct 16803357 TGAGCAGTTACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTATAACTTTCGTTAGCA 16803298 Query 18171 GACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCA 18230 || ||| | || |||| ||||| | ||||| || | | || | |||| || Sbjct 16803297 GATTCATTTTTTGTGGTTTTCCTAATTAAACTAGAAGTTACCAAAAAACCATACATAACA 16803238 Query 18231 GCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGG 18290 ||||| | |||| |||||| || | ||||| | || || || || |||||||| Sbjct 16803237 CTAAATAAGGAACCACTGAATACACCAACTACACCTAATATGTGAAATGGGTGCATAAGA 16803178 Query 18291 ATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACC 18334 || ||||| || || ||||||| | ||| || ||||||||||| Sbjct 16803177 ATGTTGTGCTCAGCCGGGAATACAATCATAAAGTTGAAAGTACC 16803134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151246076330406