Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq40249 538 1e-148 seq24705 504 2e-138 >seq40249 Length=153482 Score = 538 bits (596), Expect = 1e-148 Identities = 706/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Plus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || ||||| || ||||||||||| || || || |||||||| || || | Sbjct 349 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 408 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579 |||||||| |||||||||| ||| |||||||| || || || || |||| | | | Sbjct 409 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 468 Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 | | | |||||||| || ||||||||||| | |||||||||||| ||| | || | Sbjct 469 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 528 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 |||| ||||||||||||||| || ||||| || || | |||||||| | | ||| | Sbjct 529 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 588 Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 |||| || || ||||||||||||||||| | || |||||||| ||||||||||| |||| Sbjct 589 AATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 648 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819 | |||||||| ||||| |||||||| || ||||||| | || || | | ||| | Sbjct 649 TGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 708 Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879 | || || | || | || || |||| ||| ||||||||| || | | Sbjct 709 TGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGC 768 Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939 | || ||||| || || ||||| | ||||||||| || ||||||||||| |||||||||| Sbjct 769 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 828 Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 ||||||| || | ||| ||||||| || || || || || | |||||| ||||||||| Sbjct 829 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 888 Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059 || || || |||| || || | | ||| |||||||| ||||| || |||||||| | Sbjct 889 AACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 948 Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119 | || |||||| ||||| || | ||| || || || | |||||||||||||| || | Sbjct 949 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 1008 Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 |||| ||| | || |||| | ||||| | || | |||| | ||||| |||| Sbjct 1009 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 1068 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| ||||||||||||| | ||||||||||| || ||||| || || | || || | Sbjct 1069 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAG 1128 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | | | |||| | ||| ||||| || || ||||| || || | || || |||| Sbjct 1129 CTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 1188 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 || ||||| || || ||||| || || || || || || ||| || |||||||||| Sbjct 1189 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 1248 Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418 || | || |||| ||| ||| | || ||||| | || || |||||||| | ||| Sbjct 1249 AAACGGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 1307 Query 22419 AGACGGTTATTAGTA 22433 |||||||| | |||| Sbjct 1308 AGACGGTTTTCAGTA 1322 >seq24705 Length=1162 Score = 504 bits (558), Expect = 2e-138 Identities = 686/953 (72%), Gaps = 7/953 (1%) Strand=Plus/Minus Query 21483 GGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGA 21542 ||||||||||| || || || || ||||| || || | |||||||| |||||||| | Sbjct 1160 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGGTTAGCACGGTTGATG 1101 Query 21543 ATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTG 21602 || |||||||| || || || || | || | | | | | | ||||||||| || ||| Sbjct 1100 ATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAATTG 1041 Query 21603 AAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACA 21662 |||||||| | |||||||||||| ||| | || | |||| ||||| || ||||| Sbjct 1040 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCTACT 981 Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722 |||||||| ||||| | ||||| || | | ||| || || || || |||||||||||| Sbjct 980 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 921 Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782 ||||| | || |||||||| || |||||||| |||||||| ||||| |||||||||||| Sbjct 920 AAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGA 861 Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGAC--G 21840 ||||| |||||||| | || || | | |||||| || || | ||| || | Sbjct 860 CCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCC---TGACAAACTAG 804 Query 21841 ACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACAC 21900 | || |||| ||| ||||||||| || | || || ||||| || || |||| Sbjct 803 AAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACAC 744 Query 21901 CCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGT 21960 | | ||||||||| || ||||||||||| ||||||||||||||||| || | ||| ||| Sbjct 743 CTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGT 684 Query 21961 TGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGAT 22020 |||| || || || || || || |||||| |||||||||| || || |||| || | Sbjct 683 TGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGGT 624 Query 22021 AAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGG 22080 ||| | ||| |||||||| ||||| || |||||||| || || |||||| ||||| | Sbjct 623 AAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAG 564 Query 22081 GCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAA 22140 | | ||| || || || | |||||||||||||| || ||||| ||| | || |||| Sbjct 563 GACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAA 504 Query 22141 TGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTG 22200 | | |||| | || | || | | ||||| || ||||| | ||| ||||||| | Sbjct 503 GTAAGGAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAG 444 Query 22201 TAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGG 22260 |||||||||||||||||||| ||||| | |||||| || | | || | | | Sbjct 443 ATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGGATAATAG 384 Query 22261 CTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCAT 22320 | || || || || ||||| ||||| | | || |||| || || || || || |||| Sbjct 383 CACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCAT 324 Query 22321 CGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGG 22379 | || || || || || || | | |||||||||||||| || || |||| ||| Sbjct 323 CAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATA 264 Query 22380 AGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 ||| | || ||||| | || ||||||||||| | |||||||| || | ||| Sbjct 263 AGGTA-GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146138118881220