Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 6e-15 >seq8 Length=21613650 Score = 95.1 bits (104), Expect = 6e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| ||||| || ||||| ||||| || ||||| | ||||| ||||||||||| || Sbjct 16023283 TACCCTTTCTCTTGCCTCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCA 16023342 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||||| | ||| | || ||| ||||||| | |||| | ||| || | | Sbjct 16023343 GCATTGGAAGAATACCATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCAC 16023402 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 || | |||| | || |||||| || ||||| |||| ||| ||||||| ||| Sbjct 16023403 GGATGTTGTGAACTGAAACACCGATACCCCCAGCTGATTTACTTATAACTGCACACTCTT 16023462 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||||||| | ||||| Sbjct 16023463 TCAACGTATCATATATTCCCTCGATGCTATCATCCTTCAT 16023502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252915875102675