Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8 140 4e-28 seq10 125 9e-24 seq6 113 5e-20 seq7 107 2e-18 seq2 104 3e-17 seq5 95.1 1e-14 seq1 89.7 6e-13 >seq8 Length=21613650 Score = 140 bits (154), Expect = 4e-28 Identities = 301/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||||||| | || ||||| | || ||||| ||||||| ||| Sbjct 20963536 GTGGAGTTTCTCAAGAAGCCTGAGAGGTTCACTGCGGTCGGTGCTCGGATCCCCAAAGGT 20963595 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||||| ||| || || || || || || ||| | ||| |||||| || ||| Sbjct 20963596 GTTCTTCTCGTTGGTCCTCCTGGGACTGGTAAAACGCTCTTGGCCAAAGCCATTGCTGGT 20963655 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 || | ||| || ||| || ||| | | | ||||| ||||||||||||||| Sbjct 20963656 GAGGCCGGTGTGCCTTTCTTCTCCATCTCGGGGTCTGAGTTTGTTGAGATGTTTGTTGGT 20963715 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || || ||| ||||| || ||||| || | | || || ||| || |||||| Sbjct 20963716 GTTGGGGCCTCGAGGGTGCGTGATCTTTTCAAGAAGGCTAAGGAGAATGCTCCGTGTATT 20963775 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG-----CAGCGCT-GGTGGTATG 175530 ||||| | || ||||||||||| || || | ||| | ||| | | ||||| Sbjct 20963776 GTCTTTGTGGACGAGATTGATGCTGTTGGTAGGCAGAGAGGGACAGGGATTGGTGG---- 20963831 Query 175531 CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || ||||| || ||||| || ||| | ||||| || | || ||||||||||| ||| Sbjct 20963832 --AGGGAATGATGAAAGAGAGCAGACATTGAATCAGCTCTTGACTGAGATGGATGGGTTT 20963889 Query 175591 GACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGAC 175650 || | | ||||| || | ||| |||| || |||||| | | ||||| ||||| | Sbjct 20963890 GAGGGTAACACTGGTGTTATTGTTGTTGCTGCTACTAATAGAGCTGATATTCTTGACTCC 20963949 Query 175651 GCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 ||| | || | || || |||||||| || Sbjct 20963950 GCCTTGCTGAGACCAGGGCGTTTTGACCG 20963978 >seq10 Length=17599535 Score = 125 bits (138), Expect = 9e-24 Identities = 296/445 (67%), Gaps = 4/445 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || ||||| |||||| ||| Sbjct 1380864 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTCGGTGCTCGGATCCCGAAAGGT 1380923 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || |||| ||| || ||||| || || || ||| | || ||||| || ||| Sbjct 1380924 GTTCTCCTCGTTGGTCCTCCCGGTACTGGGAAAACACTCTTGGCAAAGGCCATTGCTGGT 1380983 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | || || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 1380984 GAAGCTGGCGTACCGTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 1381041 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| ||||| || ||||| || ||| ||| || || || |||| Sbjct 1381042 GTGTTGGTGCTTCGAGGGTCCGTGATCTTTTCAAAAAGGCCAAGGAGAACGCTCCTTGTA 1381101 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAG 175534 ||||||| | |||||||| ||||| ||||| | |||| | | ||||| | || Sbjct 1381102 TTGTCTTTGTGGATGAGATAGATGCTGTGGGTAGGCAAAGAGGAACTGGTATTGGTGGAG 1381161 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 ||||| || |||||||| || ||||||| || | || ||||||||||| ||||| Sbjct 1381162 GTAATGATGAAAGAGAACAGACGCTTAATCAGCTTTTGACGGAGATGGATGGTTTTGAAG 1381221 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCC 175654 | | ||||| || | ||| |||| || || || | | ||||| ||||| |||| Sbjct 1381222 GTAACACTGGTGTTATCGTTGTTGCTGCAACCAACAGAGCTGATATTCTTGACTCCGCCT 1381281 Query 175655 TCCTTCGCCCGGGTCGTTTTGATCG 175679 | | | || || |||||||| || Sbjct 1381282 TGTTGAGACCAGGCCGTTTTGACCG 1381306 >seq6 Length=26286742 Score = 113 bits (124), Expect = 5e-20 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 ||||||||| ||||||| ||||| ||| | ||| | |||| | ||||||||| | Sbjct 22599452 GAAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCCGAGAG 22599508 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | | |||||||| || ||||| || |||||||||||||| |||||| | || | Sbjct 22599509 GATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTT 22599568 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| |||||||||| || |||||||| || || |||||| || || | || || || Sbjct 22599569 CTGGCTGAAGAAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAACGAGTTGATCTCTCG 22599628 Query 65202 AGATGAGGGTCTCCAC 65217 ||| || || || ||| Sbjct 22599629 AGACGAAGGCCTTCAC 22599644 >seq7 Length=22597724 Score = 107 bits (118), Expect = 2e-18 Identities = 215/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||| ||| ||| || |||| |||| || || || || ||||| || Sbjct 17639423 GGCGCCAAGATTCCCAAAGGTTGTCTCCTCGTGGGTCCCCCCGGGACTGGTAAGACTCTT 17639364 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 | || |||| | || || || | || || ||| || ||| | || | | Sbjct 17639363 TTAGCTAGAGCTGTGGCTGGAGAGGCTGGAGTGCCGTTCTTCTCCTGCGCGGCGTCTGAG 17639304 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||| | || ||||||||||||||| |||||| | ||| | ||||| | || Sbjct 17639303 TTTGTTGAGCTTTTCGTTGGTGTGGGTGCCTCTAGGGTTAGGGATTTGTTTGAGAAGGCG 17639244 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || |||||||| || || |||||||||||||| ||||| | ||| | Sbjct 17639243 AAGGCTAAGGCGCCTTGTATTGTTTTTATCGATGAGATTGATGCTGTGGGGAGGCAGAGA 17639184 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | ||||| ||| | | || ||||| ||||| || || || |||||||| | || | Sbjct 17639183 GGAGCTGGGATGGGAGG--AGGGAATGATGAGAGGGAGCAGACGATTAATCAGTTGCTGA 17639126 Query 175574 CCGAGATGGATGGCTTT 175590 | ||||||||||| ||| Sbjct 17639125 CTGAGATGGATGGGTTT 17639109 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 11/225 (5%) Strand=Plus/Minus Query 177745 GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATT 177804 || || ||| | || || |||| | ||||| | ||||| ||||||||||| ||||| Sbjct 10223133 GTTATTTTCCTAGTCACGAAGTTCTCGCCTCGGCGGGGTGACTCGTGGTTGAATAGGATC 10223074 Query 177805 CCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTGAGCG 177861 ||| |||||| |||| || || | ||||||||| ||||| | ||||||||| Sbjct 10223073 CCGTTGCAGGCGTACAGGCCGTATGCTTCTCGGTA---GTTGACTGTGTACCAGTGAGCA 10223017 Query 177862 GCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGA 177921 || |||||||| | | || |||| |||| || || ||| ||||| ||| ||| Sbjct 10223016 GCGCATTTGGAGGCAGCGTAAGGAGATCTCGGGTGAAACGGCGTCGTCTCAGATTGCGGA 10222957 Query 177922 GTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 | ||| || | || ||||||||||| | | ||| ||||| Sbjct 10222956 G----GAGGAGTTGACCCGAACATCTCCGAGGATCCGGCCTGGTA 10222916 >seq2 Length=27864329 Score = 104 bits (114), Expect = 3e-17 Identities = 273/410 (67%), Gaps = 19/410 (5%) Strand=Plus/Minus Query 177564 AAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTT 177622 ||||| |||| || | ||| | |||| | || || || ||||| ||||| | | || | Sbjct 27811065 AAACT-CCTCGACGGTGTGCGACTCCTCAGTAGCCACCACATAGTCATCTGGTTTCTCCT 27811007 Query 177623 GTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAG 177682 | || ||||| |||||||| || || || |||||| || ||||||||||||| | Sbjct 27811006 GCTGCAGCATCAGCCACATTGCCTCCACGTAGTCCCCTGCGAACCCCCAGTCTCTGGAGG 27810947 Query 177683 CGTTGAGGTTACCGAGTTCAAGGAACTCTCTCT-CACCTTTCACAATTTGTTTGACGCCA 177741 | | | ||| ||||| | || || ||| || | | | ||| | | ||| Sbjct 27810946 CCTGTATGTTCCCGAGG---AAGAGCTTCGTCTGCAGC---CCGACCTTGATCCTCCCCA 27810893 Query 177742 TCA-----GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGA 177796 || |||||| || || |||| | ||||| | ||||| |||||||||| Sbjct 27810892 AGGCCCGTGTTATCTTCCGAGTCACGAAGTTCTCGCCTCGGCGGGGTGACTCGTGGTTGA 27810833 Query 177797 AGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGT 177856 | ||||| ||| |||||| |||| || || | ||||| |||||| | | ||||| Sbjct 27810832 ACAGGATCCCGTTGCAGGCGTACAGGCCGTATGCTTCTCTGTAATTGACGGTGTACCAGT 27810773 Query 177857 GAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTT 177916 |||| || | ||||||| | ||||| |||| |||| || || ||| ||||| | Sbjct 27810772 GAGCCGCGACTTTGGAGGCAGCATAGGGAGATCTCGGGTGAAACGGCGTCGTCTCAGACT 27810713 Query 177917 GTGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 | |||| ||| || | || ||||||||||| | | ||| ||||| Sbjct 27810712 GCGGAG----GAGGAGTTGACCCGAACATCTCCGAGGATCCGGCCTGGTA 27810667 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 ||||||||| ||||||| |||| ||| | || | |||| | ||||| ||| | Sbjct 22153378 GAAGAAGGCCCAATGGGCCTTGAAGTGGATCGATGGA---TCTCAGACTTTCGCAGAGAG 22153434 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | | || || ||||| ||||| || |||||||||||||| |||||| | || | Sbjct 22153435 GATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTT 22153494 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| || |||||||| || || |||||| || || || || || || Sbjct 22153495 CTGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCG 22153554 Query 65202 AGATGAGGGTCTCCAC 65217 || || || || ||| Sbjct 22153555 GGACGAAGGCCTTCAC 22153570 >seq5 Length=23960834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 244/371 (66%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || ||||| || || || ||| || || |||||| | || || ||| Sbjct 7217713 CCTGGTACTGGGAAGACGCTTCTGGCGAAAGCTATAGCTGGTGAAGCTGGCGTGCCGTTC 7217654 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| ||||||||||| ||||| ||||| ||||| Sbjct 7217653 TTCTCTATCTCCGGGTCCGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCTTCCAGGGTC 7217594 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || | | || || || || || || ||||| ||||||||||| Sbjct 7217593 CGTGATCTTTTCAAGAAGGCTAAGGAGAACGCTCCTTGCATCGTCTTTGTTGATGAGATT 7217534 Query 175495 GATGCGGTGGGCAAGCAACG-----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGA 175548 ||||| || || | ||| | ||| | | ||||| || ||||| |||||| Sbjct 7217533 GATGCTGTTGGGAGGCAGAGAGGGACAGGGATCGGTGG------AGGTAATGATGAGAGA 7217480 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATT 175608 ||||| || | || || || | || ||||||||||| ||||| | | ||||| || Sbjct 7217479 GAACAGACTTTGAACCAGCTGTTAACTGAGATGGATGGGTTTGAAGGTAACACTGGTATC 7217420 Query 175609 GTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGT 175668 | ||| |||| || || ||| | | || || ||||| ||| | | | ||||| Sbjct 7217419 ATCGTTGTTGCTGCGACCAATAGAGCAGACATTCTTGACTCCGCTTTGTTGAGGCCGGGA 7217360 Query 175669 CGTTTTGATCG 175679 || ||||| || Sbjct 7217359 CGGTTTGACCG 7217349 >seq1 Length=28635137 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/289 (68%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618 |||| ||||| | ||| | || | |||| |||| || ||||| || ||||| |||| Sbjct 12748240 TCAAGAAACTCCTCCACCGTATGCGACTCCTCCGTGGCCACAACGTAATCATCCGCCTTC 12748181 Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678 ||||| || ||||| |||||||| || ||||| || ||| || ||||||||||| Sbjct 12748180 TCTTGCTGCAGCATCAGCCACATCGCCTCAACGTAATCCCCCGCGAACCCCCAGTCTCTC 12748121 Query 177679 GCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGACG 177738 | || | |||||| ||||| || || || || ||| | | || ||| | | Sbjct 12748120 GACGCCTGGAGGTTCCCGAG---AAAGAGCT-TC-CTCTGCAGACCCACCTTGATCCTCC 12748066 Query 177739 CCA----TC-AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGT 177793 ||| || ||||||||| | || || |||| | || || | ||| || ||||||| Sbjct 12748065 CCAAGGCTCTCGTAATCTTCCTCGTCACGAAGTTCTCTCCCCGGCGCGGGGACTCGTGGT 12748006 Query 177794 TGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATT 177842 |||| | ||| || || ||| | | ||| || | || ||||| || Sbjct 12748005 TGAACAAGATCCCATTACACGCAAAAAGACCGTAAGCCTCACGGTAGTT 12747957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596269458377120