Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq24705 529 2e-145 seq40249 520 1e-142 seq10 132 6e-26 >seq24705 Length=1162 Score = 529 bits (586), Expect = 2e-145 Identities = 705/973 (72%), Gaps = 5/973 (1%) Strand=Plus/Minus Query 7903 GGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAAT 7962 ||||||||||| ||||| | ||| ||||| ||||||||||| | ||| || | ||| | Sbjct 1160 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGGTTAGCACGGTTGATG 1101 Query 7963 ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTA 8022 | ||| |||| ||| ||| | ||| | | |||||| || |||||||| || || Sbjct 1100 ATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAATTG 1041 Query 8023 AATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACA 8082 || || || ||||| || ||||| || | |||||| | || ||| ||||| | | ||| Sbjct 1040 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCTACT 981 Query 8083 ACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACTG 8141 || || | | ||| | ||||||||| | | | | |||||| |||| | ||||| || Sbjct 980 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTA-GCATATTG 922 Query 8142 GAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTG 8201 ||||||||||| ||||| || ||||||||||| ||||||||||| || ||||| ||||| Sbjct 921 GAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTG 862 Query 8202 ACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGA 8261 |||||| || ||||| | || ||| || | |||||| || || |||| | | ||| Sbjct 861 ACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGACAA-ACTAGA 803 Query 8262 TGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCC 8321 || || |||||||| ||||||||||| || || || || ||||| | ||| ||||| || Sbjct 802 AGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACC 743 Query 8322 TGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTT 8381 | ||| || || || |||||||||||||| ||||| || |||||||| | ||| ||||| Sbjct 742 TAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTT 683 Query 8382 AAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATA 8441 || |||||||| || |||| |||||| |||||||| || || ||||||| || || Sbjct 682 GAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGGTA 623 Query 8442 TACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGG 8501 | ||||| || || |||||| | || ||||| |||||| ||| ||||| || Sbjct 622 AATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGG 563 Query 8502 TCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAA- 8560 | |||||| | ||| | | ||||||| | |||||| ||| || | |||| Sbjct 562 ACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAG 503 Query 8561 TAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATG 8620 |||||| ||| | | || | || ||| ||||| || || || ||||||||||| | | Sbjct 502 TAAGGA-GTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAG 444 Query 8621 TGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAG 8680 |||||||||||||| || || ||||| ||||| || || |||| || | | || Sbjct 443 ATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGGATAATAG 384 Query 8681 CACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGT 8740 |||||||||| || ||||||||||| | || ||||| | |||||| ||||||||||| | Sbjct 383 CACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCAT 324 Query 8741 CGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACA 8800 | ||||| || || || ||||| || || || | ||||| || || || | || | Sbjct 323 CAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATA 264 Query 8801 AGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAA 8860 || ||| ||||| | ||| || ||||| |||| ||||| | || | || || || | Sbjct 263 AGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTA 204 Query 8861 CCCACTCGCAAAA 8873 ||| | ||| || Sbjct 203 TCCAGTTGCAGAA 191 >seq40249 Length=153482 Score = 520 bits (576), Expect = 1e-142 Identities = 712/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 347 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 406 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 407 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 464 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| || | |||| Sbjct 465 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 524 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 525 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 584 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| |||||||| |||| ||||| || || |||||||| Sbjct 585 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 643 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || |||||||||||||| || | ||||| | || ||| || | Sbjct 644 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 703 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || |||||||| ||||||||||| || || Sbjct 704 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 763 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 764 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 823 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 824 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 883 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || || ||||||| ||| || | ||||| || || |||||| | || || Sbjct 884 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 943 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534 ||| |||||| ||| ||||| || | |||||| | ||| | | ||||||| Sbjct 944 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1003 Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594 | |||||| ||| || | |||| | ||||| | | || | | ||| ||||| Sbjct 1004 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1063 Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654 ||||| || | ||| ||||| | | ||||||||||| || || || || || || || Sbjct 1064 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 1123 Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714 |||||| |||| |||| | ||||| || || || |||||||| || | | || Sbjct 1124 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1183 Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774 || | |||||||||||||||||| || ||||| || || ||||||||||| ||||| | Sbjct 1184 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1243 Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834 ||||| | || || | || ||| ||| ||||| | ||| |||||||| || | Sbjct 1244 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1303 Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| | ||||| || | ||| Sbjct 1304 GTAAAGACGGTTTTCAGTACTAGTTATCCA 1333 >seq10 Length=17599535 Score = 132 bits (146), Expect = 6e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8167 TGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGA 8226 ||||||| ||||| || || || |||||||||||||| || |||||| | ||| | Sbjct 16803357 TGAGCAGTTACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTATAACTTTCGTTAGCA 16803298 Query 8227 GACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCA 8286 || || | || || || | || |||| | ||| || || ||| |||| | |||| || Sbjct 16803297 GATTCATTTTTTGTGGTTTTCCTAATTAAACTAGAAGTTACCAAAAAACCATACATAACA 16803238 Query 8287 CTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGA 8346 || || | || |||| ||| | ||| |||| ||| || || || || ||||||||| Sbjct 16803237 CTAAATAAGGAACCACTGAATACACCAACTACACCTAATATGTGAAATGGGTGCATAAGA 16803178 Query 8347 ATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAG 8402 ||||| ||||| || ||||||| | ||| ||||| || |||||||| || | ||| Sbjct 16803177 ATGTTGTGCTCAGCCGGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCATAG 16803122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615552551928280