Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq40249 538 1e-148 seq24705 504 2e-138 >seq40249 Length=153482 Score = 538 bits (596), Expect = 1e-148 Identities = 706/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Minus Query 41254 TACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG- 41312 |||| | ||||||||||| | |||||||| || || | ||||| || | ||| ||| Sbjct 1322 TACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGA 1264 Query 41313 CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAA 41372 |||| || | |||||||||||| || ||| || || || || || || ||||| | Sbjct 1263 CCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTA 1204 Query 41373 TCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCG 41432 | || ||||| || |||| || || | || || ||||| || || ||||| ||| | Sbjct 1203 TTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTA 1144 Query 41433 TTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTG 41492 |||| | | || || || | || || ||||| || ||||||||||| | ||| Sbjct 1143 TTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTG 1084 Query 41493 ATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCG 41552 |||||||||| |||||||| ||||| | |||| | || | ||||| | |||| | Sbjct 1083 ATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTG 1024 Query 41553 TCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGA 41612 | | ||| ||||| || |||||||||||||| | || || || ||| | || |||| Sbjct 1023 TAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 964 Query 41613 TCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGT 41672 | |||||| || || |||||||| || ||||| |||||||| ||| | | || || Sbjct 963 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAA 904 Query 41673 TTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACA 41732 |||| || || ||||||||||| |||||| | || || || || || ||||||| | Sbjct 903 TTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTA 844 Query 41733 TGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGG 41792 || | || ||||||||||||||||| ||||||||||| || ||||||||| | ||||| | Sbjct 843 TGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 784 Query 41793 CCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCAC 41852 | || ||||| || || | || ||||||||| ||| |||| || || Sbjct 783 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTT 724 Query 41853 TCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGG 41912 | || | || || || ||| | | || || | ||||||| || |||||||| | Sbjct 723 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAG 664 Query 41913 AAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATG 41972 |||| |||||||| ||||| ||||||||||| |||||||| || | ||||||||||||| Sbjct 663 AAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATG 604 Query 41973 CTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTA 42032 |||| || || ||||| ||| | | |||||||| | || || ||||| || ||||||| Sbjct 603 CTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTA 544 Query 42033 TTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTA 42092 |||||||| |||| | || | ||| |||||||||||| | ||||||||||| || | Sbjct 543 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCA 484 Query 42093 ACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACC 42152 ||||||| | | | | | | |||| || || || || |||||||| ||| |||||| Sbjct 483 ACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACC 424 Query 42153 GTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACC 42212 |||| |||||||| | || || |||||||| || || || ||||||||||| || |||| Sbjct 423 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACC 364 Query 42213 TTGCATCCGTGGAGG 42227 | || | || |||| Sbjct 363 TAGCTGCTGTTGAGG 349 >seq24705 Length=1162 Score = 504 bits (558), Expect = 2e-138 Identities = 686/953 (72%), Gaps = 7/953 (1%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | || |||||||| | ||||||||||| || | ||||| || | ||| ||| | Sbjct 212 ACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGAC 270 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 ||| || || |||||||||||||| | | || || || || || || ||||| || Sbjct 271 CGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 330 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 || || || || |||| || | | ||||| ||||| || || || || || | | Sbjct 331 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTAT 390 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 || | | || |||||| | ||||| |||||||||||||||||||| | |||| Sbjct 391 CCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 450 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||| ||| | ||||| || ||||| | | || | || | |||| | | |||| || Sbjct 451 TGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTCCTTACTTGGTGT 510 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||| ||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 511 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 570 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 |||||| || || |||||||| || ||||| |||||||| ||| | |||| || | Sbjct 571 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 630 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733 ||| || || |||||||||| |||||| || || || || || || ||||||| || Sbjct 631 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTAT 690 Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 | | || ||||||||||||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 691 GATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 750 Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTC--GTCA 41851 || ||||| || || | || ||||||||| ||| |||| || || || Sbjct 751 TGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTT 810 Query 41852 CTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAG 41911 ||| | || || |||||| | | || || | |||||||| |||||||||||| Sbjct 811 GTCA---GGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAG 867 Query 41912 GAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATAT 41971 ||||| ||||| |||||||| |||||||| || |||||||| || | |||||||||||| Sbjct 868 GAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 927 Query 41972 GCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGT 42031 ||||| || || || || ||| | | || ||||| | ||||| |||||||| ||||| Sbjct 928 GCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGA 987 Query 42032 ATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTT 42091 || ||||| |||| | || | ||| |||||||||||| | ||||||||||| || Sbjct 988 ATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTC 1047 Query 42092 AACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAAC 42151 ||||||||| | | | | | | || | || || || || |||||||| || | ||| Sbjct 1048 AACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 1107 Query 42152 CGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCC 42204 ||||| |||||||| | || || ||||| || || || || ||||||||||| Sbjct 1108 CGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCC 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146144515822296