Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq24705 630 8e-176 seq40249 567 8e-157 seq10 131 2e-25 >seq24705 Length=1162 Score = 630 bits (698), Expect = 8e-176 Identities = 731/979 (75%), Gaps = 15/979 (2%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| |||| || || | || |||| |||||||||||| | | Sbjct 192 TCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGA 251 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||||||||| ||||| |||| Sbjct 252 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 311 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| ||||| | Sbjct 312 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATA 371 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | |||||||||||| || |||||| ||| || || || | ||||| || || |||| Sbjct 372 TTATCTCTGGTGCTATTATCCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTT 431 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||||||||| |||||||||||||||| | || | || Sbjct 432 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTC 491 Query 155270 TCCACTTCCTTA-TCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTAC 155325 | |||| ||||| | || | ||| | | | |||||| ||||||||||| || | Sbjct 492 TACACT-CCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 547 Query 155326 CGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTC 155385 ||||| || |||||||||||||| ||||||||| || || || || | ||||| Sbjct 548 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 607 Query 155386 GCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGT 155445 ||||| ||| | |||| ||| | |||||||| || ||||||| |||||| | || Sbjct 608 GCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGA 667 Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 |||||||||||||| |||| |||| | || ||||| || || ||||| || ||||||||| Sbjct 668 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 727 Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCAC 155565 || || |||||| | || ||||| ||||| ||||| || || || || ||||||||| Sbjct 728 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 787 Query 155566 GGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTAT 155625 ||||| ||||| || || | | || | ||||||||||| | || ||| || | Sbjct 788 GGTTCTTTGGTAACTTC-TAGTTTGTCAGGGAAACTACTGAAAATGAATCTGCTAATGAG 846 Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 |||||||| || || ||||| |||||||||||||| ||||| ||||||||||| || || Sbjct 847 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTT 906 Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 155745 || || | |||||||| ||||| ||||||||||| | | | ||||||||| | Sbjct 907 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 966 Query 155746 GCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTC 155805 ||||| |||||||| || | |||||| |||||| | ||| | || ||||| ||| Sbjct 967 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 1026 Query 155806 AACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATC 155862 ||||| || |||||||| |||||||| |||||||| || |||| ||| || || Sbjct 1027 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGCGTTATT 1083 Query 155863 CCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGT 155922 ||| ||||| || || | ||||| ||| ||||||||||||||||||||||| ||| Sbjct 1084 AATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGT 1143 Query 155923 AACGCTCACAACTTCCCTC 155941 || |||||||||||||||| Sbjct 1144 AATGCTCACAACTTCCCTC 1162 >seq40249 Length=153482 Score = 567 bits (628), Expect = 8e-157 Identities = 726/998 (73%), Gaps = 12/998 (1%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 |||| | ||| ||||| | |||| ||||| | || | || ||||| |||||| | | Sbjct 1341 TCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGA 1282 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||| ||||||||||| |||| Sbjct 1281 TGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTC 1222 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| |||||||||||||||||||| || |||| ||| | | || || ||||| | Sbjct 1221 CAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATA 1162 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | || || ||||| || | |||| ||| || |||||| | || || || || || | Sbjct 1161 TTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCT 1102 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| | ||||||| ||| | ||||| |||||||||| |||| | || Sbjct 1101 GGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTC 1042 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | ||||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 1041 TACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 985 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| || || || || | ||||| | Sbjct 984 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 925 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | | || || | |||||||| ||| ||||||| |||||||| || | Sbjct 924 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 865 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 ||||||||||||| |||| |||| | || ||||| || || ||||| || |||||||||| Sbjct 864 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 805 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || || || ||||||||| | Sbjct 804 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 745 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | ||| | ||||| || || | || ||| || | | Sbjct 744 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 685 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 |||||| ||||| ||||||||||||||||| |||||||| |||||||| || || || | Sbjct 684 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 625 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 | || | |||||||| ||||| |||||||| || | | | || |||||| | | Sbjct 624 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 565 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 | || ||||| || || | || ||| |||||| | ||| | || ||||| |||| Sbjct 564 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 505 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCC 155863 |||| || |||||||| |||||||| || ||||| || |||| || || || Sbjct 504 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTA 448 Query 155864 CTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTA 155923 ||| ||||| || ||| ||||||| ||| |||||||||||||| ||||| || |||| Sbjct 447 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 388 Query 155924 ACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 155961 | ||||||||||||||||| ||||| ||||||| |||| Sbjct 387 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 350 >seq10 Length=17599535 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 |||||||||||||| |||| |||| | || |||| || || ||||| || ||||||||| Sbjct 16803128 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCCGGCTGAGCACAACATTCTTATGCAC 16803187 Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCAC 155565 || || ||||| | || |||| ||||| ||| |||| || | || || |||| | Sbjct 16803188 CCATTTCACATATTAGGTGTAGTTGGTGTATTCAGTGGTTCCTTATTTAGTGTTATGTAT 16803247 Query 155566 GGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTAT 155625 |||| ||||| || ||| |||| | |||| || | | || ||| ||| | Sbjct 16803248 GGTTTTTTGGTAACTTCTAGTTTAATTAGGAAAACCACAAAAAATGAATCTGCTAACGAA 16803307 Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCA 155675 |||| | ||||| ||||||||||||||||| |||||||| ||||||| Sbjct 16803308 AGTTATAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAACTGCTCA 16803357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584540962100440