Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 9e-13 seq9 86.0 1e-11 >seq3 Length=31725688 Score = 89.7 bits (98), Expect = 9e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 193169 CTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAA 193228 |||||| ||| || || || | || || | | ||| || || || ||||||||||| Sbjct 13311163 CTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAA 13311104 Query 193229 AATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || || ||||| || || || || ||||| || ||||| || || |||| || | ||| Sbjct 13311103 GATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATT 13311044 Query 193289 TAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 |||||| || || |||||| || | ||| ||||| || || || | || || || Sbjct 13311043 GTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGAC 13310984 Query 193349 AAATATTTGCAT 193360 ||| || ||||| Sbjct 13310983 AAAGATCTGCAT 13310972 >seq9 Length=37155481 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || |||||||| || | ||| || ||| || ||||| | | || | ||| Sbjct 16960944 AGGACGAGATGCAAAGTTGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTACGCCCATCT 16961003 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || || |||||||| || ||||| || ||||| |||| || ||||||||||| Sbjct 16961004 TCAAGCTGCTTACCGGCAAAGATCAATCTTTGCTGATCCTGAGGAATACCTTCTTTATCC 16961063 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| ||| | || || ||||| || ||| || || | ||| || || Sbjct 16961064 TGAATCTTGGCTTTAACGTTGTCGATGGTATCAGAGCTCTCCACCTCCAAAGTGATCGTC 16961123 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || || ||||| Sbjct 16961124 TTCCCTGTCAGTGTCTTAACGAAGATCTGCAT 16961155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899201772625680