Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq9 109 8e-19 seq10 95.1 2e-14 >seq9 Length=37155481 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| |||| || || || ||||| |||| || || ||| Sbjct 16960471 ATGCAGATCTTTGTCAAGACACTGACCGGGAAGACCATTACTCTAGAGGTGGAGAGTTCC 16960412 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||||| ||||| ||||||||||| ||||| || || Sbjct 16960411 GACACCATTGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGACCAG 16960352 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | |||||| ||||||||||| ||| | || || | || || || Sbjct 16960351 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACCCTAGCTGACTACAAC 16960292 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || |||||| |||| ||||| || ||| || Sbjct 16960291 ATCCAGAAAGAGTCGACCCTTCACTTGGTGCTA 16960259 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| |||| || || || ||||| |||| || || ||| Sbjct 16960699 ATGCAGATCTTTGTCAAGACACTGACCGGGAAGACCATTACTCTAGAGGTGGAGAGTTCC 16960640 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||||| ||||| ||||||||||| ||||| || || Sbjct 16960639 GACACCATTGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGACCAG 16960580 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | ||||| | |||||| ||||||||||| ||| Sbjct 16960579 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGAT 16960544 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| ||||| || ||||| |||||||| || || || || ||| Sbjct 16960927 ATGCAAATCTTCGTTAAGACATTAACCGGAAAGACTATTACTTTGGAGGTGGAGAGTTCA 16960868 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || ||| || || || || || || || ||||| || || Sbjct 16960867 GATACTATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAG 16960808 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| ||||||||||| ||| Sbjct 16960807 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGAT 16960772 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| ||| |||| || || || || || || || || || ||| Sbjct 16961155 ATGCAGATCTTCGTTAAGACACTGACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTCT 16961096 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| || || || ||||||||||| || |||| || || Sbjct 16961095 GATACCATCGACAACGTTAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCAGGATCAG 16961036 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||||||||| | ||||||||||||||| |||||| Sbjct 16961035 CAAAGATTGATCTTTGCCGGTAAGCAGCTTGAAGAT 16961000 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || || || ||||| |||| || || ||| Sbjct 16984470 ATGCAGATCTTTGTCAAGACTCTTACCGGTAAGACCATTACTCTAGAGGTGGAGAGTTCC 16984411 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || |||||||| |||||||| || Sbjct 16984410 GACACCATTGACAACGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 16984351 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| ||| | || || | || || || Sbjct 16984350 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTACAAC 16984291 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||| |||| |||||||| |||||| Sbjct 16984290 ATTCAGAAGGAGTCGACTCTTCATTTGGTGTTA 16984258 >seq10 Length=17599535 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || ||||| || || ||||| || || ||||| || || Sbjct 17168593 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTCA 17168652 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| ||| || || || || ||||| || ||||| || ||| Sbjct 17168653 GACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCAA 17168712 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | || ||||| ||||| || ||| || ||||| | ||||| || Sbjct 17168713 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAAC 17168772 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| ||||| | ||||| Sbjct 17168773 ATCCAGAAGGAGTCGACTCTTCACCTTGTGTT 17168804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731503786048400