Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9 100 6e-16 seq10 91.5 3e-13 seq8 91.5 3e-13 seq1 87.8 4e-12 >seq9 Length=37155481 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| || || || || | ||||| ||| || || ||||| ||| Sbjct 16960470 ATACCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTATAGTCA 16960529 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || || |||||||| || | ||| || || || Sbjct 16960530 GCCAAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGA 16960589 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| ||| || || || | || || || Sbjct 16960590 GGAATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCC 16960649 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||||||| || || || | ||| || | ||| |||||||| Sbjct 16960650 ACCTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 16960699 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||||| || || || | || | |||||| ||| || || |||| Sbjct 16960244 ACCACCACGGAGACGTAGCACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGC 16960303 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| || | || || || |||||||| || | ||| || || || || Sbjct 16960304 TAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGG 16960363 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| ||||| ||| || || || | || || || || Sbjct 16960364 AATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCAC 16960423 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||||||||| || || || | ||| || | ||| |||||||| Sbjct 16960424 CTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 16960471 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||||| || ||||| | ||| | ||| || || || || ||| Sbjct 16984241 ATGCCACCACGCAGACGTAACACCAAATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCA 16984300 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || || |||||||| || ||||| || || || Sbjct 16984301 GCCAAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGA 16984360 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| || || || || | || || || Sbjct 16984361 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCC 16984420 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||||||| ||||| || | || || | ||| |||||||| Sbjct 16984421 ACCTCTAGAGTAATGGTCTTACCGGTAAGAGTCTTGACAAAGATCTGCAT 16984470 >seq10 Length=17599535 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | || | ||||| ||| || |||||| |||||| Sbjct 17168138 ATACCACCACGAAGACGCAGAACAAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCA 17168079 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| ||| |||| || | || ||||| || ||||| | ||||| || || || Sbjct 17168078 GCGAGTGTGCGTCCATCCTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGA 17168019 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| || || ||| || | || || || Sbjct 17168018 GGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCAGAGCTCTCG 17167959 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || || || | ||||| | || || ||||| Sbjct 17167958 ACCTCGAGAGTAATGGTCTTGCCGGTGAGCGTTTTCACGAAAATTTGCAT 17167909 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| || || | || | ||| | ||| || ||| || ||||||| Sbjct 17168819 CCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 17168760 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || | |||| || | ||||||||||| ||||| | ||||||||| || || || Sbjct 17168759 AAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGA 17168700 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || ||| || || || ||| | ||||| || ||| Sbjct 17168699 ATCCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCTATCGTGTCTGAGCTCTCAACT 17168640 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || || || || || || || || || | |||||| |||||| Sbjct 17168639 TCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCATT 17168592 >seq8 Length=21613650 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||| | | || || || | ||| | |||||| || || || |||| | Sbjct 8932583 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCT 8932524 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | |||||| ||||||||||| | |||||||||||||||||| Sbjct 8932523 AGCGTTCGACCATCCTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGTTGATCAGGTGGT 8932464 Query 192430 ATTCCTTCTTTATCTTGT 192447 || || ||||| || ||| Sbjct 8932463 ATCCCCTCTTTGTCCTGT 8932446 >seq1 Length=28635137 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| || || || || | |||| ||| || ||| || ||||| | || || || Sbjct 22221657 AGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGA 22221716 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| |||| || || ||||||||||| || ||||| || || ||||| || || ||| Sbjct 22221717 CCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCT 22221776 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| || || ||| || || |||| || || ||| || || | ||| Sbjct 22221777 TTGTCTTGGATCTTGGCTTTGACGTTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTG 22221836 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || |||| || || ||||| Sbjct 22221837 ATAGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCAT 22221874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983972313201150