Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 122 3e-22 seq5 84.2 6e-11 >seq10 Length=17599535 Score = 122 bits (134), Expect = 3e-22 Identities = 278/412 (67%), Gaps = 20/412 (5%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| |||||||| || || || || || || | ||| || ||| || Sbjct 13512434 AAACCCATCCATTTCAGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTCC 13512375 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | || ||| || | ||| || | |||||||||||||| || |||||||| | Sbjct 13512374 TCCTAAA----CCGGTTCCC--CTTATTCTCCCAACAGCATCAATCTCATCAATGAACAC 13512321 Query 289059 CACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 | ||| || || | |||| || | ||| || || ||||| || | |||||| Sbjct 13512320 TAAACAGGGTGAGTTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGATGCT 13512266 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | ||||||| |||| |||| || || ||| | || | | | ||| | || Sbjct 13512265 CCTACACCAACAAACATCTCTATGAACTCCGAACCAGACAATGAGAAGAACGGAACTCCA 13512206 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| || |||| ||| | ||||| || ||||| || ||||| || ||||| || Sbjct 13512205 GCTTCTCCGGCTATGGCCTTGGCCAGGAGAGTCTTTCCGGTTCCTGGCGGTCCTGTCAAC 13512146 Query 289234 AGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291 | || || ||||| | ||| || |||| || || | |||||||||| | || || | Sbjct 13512145 AAGACACCTTTTGGGATTTTAGCACCCA--AGGCTGAGAATTTCTCAGGTGTTTTCAAGA 13512088 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 ||||||| || || |||| || | || || || || |||||| || || Sbjct 13512087 ATTCTACTATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCAACGTC 13512036 >seq5 Length=23960834 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 408943 AGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGA 409002 |||||| || ||||||||||||||| || | |||||||||||||| |||| | |||||| Sbjct 20117010 AGTTCTCGTAGCTCAGTTGGTTAGAGCGTTGATCTTATGAGCCGAAGGTCGCGTGTTCGA 20117069 Query 409003 GTCCCACATAGAACATTTT 409021 ||||| | ||||||||| Sbjct 20117070 GTCCCGCCGGGAACATTTT 20117088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471058597921913