Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq40249 524 9e-144 seq24705 499 3e-136 seq3029 114 1e-20 seq10 114 1e-20 >seq40249 Length=153482 Score = 524 bits (580), Expect = 9e-144 Identities = 720/1001 (72%), Gaps = 4/1001 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| ||||| || || | ||| |||| ||||||||||| || Sbjct 1342 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1283 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 1282 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1224 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 72412 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 1223 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 1165 Query 72413 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 72472 | || || || ||||| | |||| |||| || || || || || || || || | Sbjct 1164 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 1105 Query 72473 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTA 72532 |||||||||| || | | || || ||| | || ||||| |||||||| | || || Sbjct 1104 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 1045 Query 72533 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 1044 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 985 Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 72652 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || || || Sbjct 984 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 925 Query 72653 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 72712 | || ||| | | || ||| | ||||| || || |||||||||||||| ||||| | Sbjct 924 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 865 Query 72713 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 72772 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 864 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 805 Query 72773 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 72832 | || || ||| ||||||||| ||| | ||||| || || || ||||| ||||| | Sbjct 804 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 745 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892 |||| | || ||||| | | ||||| || || ||||| || || | || | | Sbjct 744 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 685 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 | || | ||||| |||||||||||||| || |||||||| |||||||| || || || | Sbjct 684 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 625 Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | | Sbjct 624 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 565 Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072 | | | || ||||| || | ||||| || | | ||||| |||| ||||| |||| Sbjct 564 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 505 Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 73132 |||| || || ||||| |||||||||||||| || ||| | ||| || | | Sbjct 504 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 445 Query 73133 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 73192 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 444 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 385 Query 73193 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 73233 | ||||||||||| ||||||||||| ||| |||| || || Sbjct 384 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 344 Score = 360 bits (398), Expect = 2e-94 Identities = 709/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 31924 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 31983 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | ||||||||||| || || || |||||||| || | || | || ||||||||| || Sbjct 31984 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAG 32043 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 32044 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 32103 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 ||||||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 32104 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 32163 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | || ||||| || || |||||||||||| || || |||| ||||||||| || || | Sbjct 32164 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 32223 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 32224 GGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 32283 Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772 | |||| || |||| | || ||||| || ||| | || || || | || | Sbjct 32284 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 32343 Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832 | || || |||||||||| ||||| |||| || | |||||||||| || | Sbjct 32344 CTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 32403 Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 73892 || || ||||| || || || ||||| | || | || | || || || || ||| Sbjct 32404 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 32463 Query 73893 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 73952 || | || ||||||||||||||||| || || ||| |||| || | || | ||| Sbjct 32464 GGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTAT 32523 Query 73953 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 74012 | || || |||||||| || ||| | || || || | |||||| || Sbjct 32524 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 32568 Query 74013 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTT 74072 | | | | ||| |||| ||| | || || | || || || | ||||| |||| Sbjct 32569 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 32622 Query 74073 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 74132 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 32623 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 32682 Query 74133 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 74192 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 32683 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTC 32742 Query 74193 TAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 74252 | || | || |||||||| | ||||| | || || ||||| || || || || || Sbjct 32743 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 32802 Query 74253 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 74312 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 32803 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 32862 Query 74313 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 74372 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 32863 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 32922 Query 74373 AAGTCTTGCCACGAGGCAACGCACTATAA 74401 | || | ||||| || ||||| || ||| Sbjct 32923 AGGTTCTACCACGTGGAAACGCTCTTTAA 32951 >seq24705 Length=1162 Score = 499 bits (552), Expect = 3e-136 Identities = 693/964 (72%), Gaps = 5/964 (1%) Strand=Plus/Plus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| |||||| ||||| | ||| | || ||||| ||||| || |||||||| Sbjct 200 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 258 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 259 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 318 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 319 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 378 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 ||||||| | | || |||| || || ||||| ||||| || || || |||||||| Sbjct 379 TGGTGCTATTATCCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 438 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || || | || |||||||| || || || |||||||| || || || || | ||| | Sbjct 439 TGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC-T 497 Query 72543 CCTTA-TTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAA 72601 ||||| |||| | || || |||||| | |||||||||| | | | || || | Sbjct 498 CCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTA 557 Query 72602 TGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCC 72661 || | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| Sbjct 558 TGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCT 617 Query 72662 TTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTA 72721 | | || || | ||||| || || |||||||||||||| |||| ||||| |||| Sbjct 618 TGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTA 677 Query 72722 CGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATA 72781 | |||||||| ||| | || ||||| || || |||||||| || |||||||| || || | Sbjct 678 CTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACA 737 Query 72782 TGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTG 72841 || ||||||||| ||| | ||||| || || || ||||| ||||| ||||| | | Sbjct 738 TGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGG 797 Query 72842 TTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGT 72901 | ||||| | | |||| || || || || || || | || | || || || | Sbjct 798 TAACTTC-TAGTTTGTCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAAT 856 Query 72902 TCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAA 72961 | || ||||| |||||||| ||||| ||||| ||||||||||| || || || |||||| Sbjct 857 TTGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAA 916 Query 72962 TCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCC 73021 ||||||| ||||| ||||||||||||||||| |||||||||||| | |||| | | Sbjct 917 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGC 976 Query 73022 CTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACG 73081 ||||||| | | ||||| || | | ||||| |||| ||||| |||||||| || | Sbjct 977 CTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATG 1036 Query 73082 GATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAG 73141 | ||||| ||||||||||| || || ||| | || || | || |||| | Sbjct 1037 GTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTG 1096 Query 73142 ATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACT 73201 || | | ||| | || |||||||| |||||||| ||||| ||| | ||||| ||||||| Sbjct 1097 ATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 1156 Query 73202 TCCC 73205 |||| Sbjct 1157 TCCC 1160 >seq3029 Length=7874 Score = 114 bits (126), Expect = 1e-20 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| |||||| || || |||||||| || | ||||||||||| || || || || Sbjct 247 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 188 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 ||||||||||| | || | || |||||||| ||| || ||||| || || || ||| Sbjct 187 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 128 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 || || ||||| | || || ||| | || || ||||| ||||| |||||||| Sbjct 127 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAATTTCTTAACCGCAGCAGTT 68 Query 73556 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAA 73615 || || |||| || | | | || | | ||| | || ||||| || || |||||| Sbjct 67 TCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCCGAAGCACAA 8 Query 73616 GGAGAT 73621 |||||| Sbjct 7 GGAGAT 2 >seq10 Length=17599535 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 72706 CTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTA 72765 ||| | ||||| ||||| |||||||| ||| | || |||| || || |||||||| || Sbjct 16803122 CTATGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCCGGCTGAGCACAACATTCTT 16803181 Query 72766 ATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCA 72825 |||||||| || || || |||||||| ||| | ||| ||||| | || |||| Sbjct 16803182 ATGCACCCATTTCACATATTAGGTGTAGTTGGTGTATTCAGTGGTTCCTTATTTAGTGTT 16803241 Query 72826 ATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAA 72885 ||| | |||| | || ||||| | |||| || | || ||| | || || | Sbjct 16803242 ATGTATGGTTTTTTGGTAACTTCTAGTTTAATTAGGAAAACCACAAAAAATGAATCTGCT 16803301 Query 72886 AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCA 72941 ||| | | |||| ||||| |||||||||||||| || |||||||| ||||||| Sbjct 16803302 AACGAAAGTTATAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAACTGCTCA 16803357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572585380130920