Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-51 seq6 212 8e-49 seq25001 120 4e-21 seq3 98.7 1e-14 seq7 86.0 8e-11 >seq2 Length=27864329 Score = 221 bits (244), Expect = 1e-51 Identities = 230/300 (77%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||| ||||| || ||||||||||| ||||| ||||| | | |||| | || | Sbjct 22153286 CCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACCT 22153227 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||||||| ||| || |||||| ||||| |||||| |||||||| Sbjct 22153226 GCACGTCGGACATGAACCGGGAGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCGA 22153167 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGT 869807 | || || |||||||| ||||| |||||||||||| ||||| |||| | | |||||| Sbjct 22153166 AGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGGTTGGTCTCCCAGT 22153107 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | |||||| | |||||| || |||||||||||||||| ||||| ||||| || | Sbjct 22153106 CGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCT 22153047 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 ||||||||||||| | || ||||| |||| ||||| | | || | || |||||||| Sbjct 22153046 TGTACATCTCCCAGATCTGAGGGTAGTGGATCGGGAACATGCAGAATCTGTCTGGGGTTG 22152987 Score = 131 bits (144), Expect = 2e-24 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| |||||| |||| ||| || |||||||| || |||||| Sbjct 22153563 CCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCTCGCTTC 22153504 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| |||||| || || ||||| ||||| || || ||| || ||| Sbjct 22153503 TTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCACGCGAAG 22153444 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || || ||| || || || | ||| || | ||||||||||| ||||| Sbjct 22153443 GCCACGATCCTCTCTGCGAAAGTCT-GAGATCC-----ATCGATCCACTTCAAGGCCCAT 22153390 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | |||||| ||| || | || | || || || ||||| ||||| |||||| | || Sbjct 22153389 TGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTCC 22153330 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 |||||||| ||||| || | || ||| Sbjct 22153329 TTGTTGTCCTTGATGTAGGTATCTAGCAAGAG 22153298 Score = 87.8 bits (96), Expect = 2e-11 Identities = 208/312 (67%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| || || || || |||| ||||||||| Sbjct 22153878 GCCTTCTGGTAATCACCAACCCTCTTCTCGAAGAAATTCGTTTTACCCTGAAGCGAGATC 22153819 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||||||||| ||||| || | | ||| ||| || | || |||| | Sbjct 22153818 AACTCCATCCAATCAAACGGATTCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCC 22153759 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | || || |||||||| || ||||| | ||| | | | |||||| || | Sbjct 22153758 AAAAGCCTATCCGCCACAAACTCAATATACTGACTCATCAAGTCCCGGTTCATCCCCACC 22153699 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | ||| || |||| |||| ||||||||| |||||||||| || || ||| | | Sbjct 22153698 AACGCGCAGGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACG 22153639 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||| | || | || || |||| |||| | | || || |||| |||||| || Sbjct 22153638 ATC-GACTTCACGCGCTCCTCCGATAGCTTCGTCCTCAACAAGGTATAGATCAGGCACGC 22153580 Query 868990 AAAGTCGCAGTG 869001 ||||||||||| Sbjct 22153579 GAAGTCGCAGTG 22153568 >seq6 Length=26286742 Score = 212 bits (234), Expect = 8e-49 Identities = 227/296 (77%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || ||||||||||| ||||| ||||| | | |||| | ||||| Sbjct 22599358 GAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACTTGC 22599299 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||| || ||||| ||||| |||||| ||||||||| Sbjct 22599298 ACGTCGGACATGAACCGGGAGGCGAGATTCTCTAAAACGATTCCGTCGGAGGCGGCGAAG 22599239 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| ||||| ||||||||||| ||||| |||| | |||||| | Sbjct 22599238 AAGGCGAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGA 22599179 Query 869813 GTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||||| ||| ||| || || || ||||||||||||| |||||||||||||| ||||| Sbjct 22599178 GTGTCTTGCGA-GAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTA 22599120 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 ||||||||| | ||| | ||| |||| ||||| | | || | || |||||||| Sbjct 22599119 CATCTCCCAGATCTGCGGTTAGTGGATCGGGAACATGCAGAATCTGTCTGGGGTTG 22599064 Score = 149 bits (164), Expect = 8e-30 Identities = 197/272 (72%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| ||| ||||| |||||| |||| | || |||||||| || |||||| Sbjct 22599637 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCCTCGCTTC 22599578 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||||| |||||| || || ||||| ||||| || || ||| ||||| Sbjct 22599577 TTCAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAAGCAAAC 22599518 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || || |||||| || || | ||| || || |||||||||||| ||||| Sbjct 22599517 GCCACGATCCTCTCGGCGAAAGTCT-GAGATCC-----GTCGATCCACTTCATGGCCCAT 22599464 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | |||||| ||| || | || | || || || ||||| |||||||||||| | || Sbjct 22599463 TGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGGTGGTCCCTCTCT 22599404 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 |||||||| || ||||||| |||||| Sbjct 22599403 TTGTTGTCCTTGATGTACGTGTCGAGCAGGAG 22599372 >seq25001 Length=364 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| | || | ||||| |||||| | ||| | | | || Sbjct 300 GCTTGGCGAGCTCACCGGGCAGCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGA 241 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || ||||| || || | | |||| || |||| | Sbjct 240 TCGTCGAACGCTTGTTGTAGTGGGCGAGACGAGACGCTTCCGCGGCGATACGCTCGAAGA 181 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| | ||| |||||| || |||||||| Sbjct 180 TGTCGTTCACGAACGAGTTCATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGT 121 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 120 GGACCTGCTTCAACACCTTGTAGATG 95 >seq3 Length=31725688 Score = 98.7 bits (108), Expect = 1e-14 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||||| |||||| |||| | || ||||| || || || ||| Sbjct 18728291 CCATCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATAAGCCCTCGTTTC 18728232 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||| | |||||| || || ||||| ||||| || | || ||| ||| Sbjct 18728231 TTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTATGCGCAGGCGAAG 18728172 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||||| || ||| || ||||| | ||| || || |||||||||||||||||| Sbjct 18728171 GCGATGCTCCTCTCCGCGAAGGTCT-GAGATCC-----GTCGATCCACTTCATCGCCCA 18728119 >seq7 Length=22597724 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || || || |||||||| || ||||| || ||| || | ||||| || Sbjct 14774236 GCTGCTAATTATCTGAACATCAAGAACCTTCTCGACCTGACATGCCAGACAGTGGCTGAC 14774177 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||| | || |||||||| |||| |||||| ||||||||| ||| Sbjct 14774176 ATGATCAAGGGCAAGACTCCGGAGGAGATTCGCACGACCTTCAACATCAAGAACG 14774122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103836178573933