Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq18002 96.9 3e-15 seq7 84.2 2e-11 >seq10 Length=17599535 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||||||||| || ||||| || ||||| || || ||| | ||| ||| || Sbjct 17168592 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 17168651 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | | || || |||||| ||||| ||||| | || ||| | Sbjct 17168652 A-GACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACC 17168710 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| ||||| || | || ||||||||||| ||||||| || || |||| ||||||| Sbjct 17168711 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACA 17168770 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||| || || || || || | ||| | ||||| | || || || |||| Sbjct 17168771 ACATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGAA 17168821 >seq18002 Length=287768 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509 ||||| |||||||| || || |||||||| || | |||| || || | || | ||| Sbjct 191891 TGCGCACCCAGCTCACAGCCAAAGTACTTGGTGGTGTAAGCAGCAGGTCTCCCCAAGGCC 191950 Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569 ||||||||||| |||||| || | ||||||||||||||| || | ||||||| | Sbjct 191951 TTGGCGATTTCAACCATGTTAACAACATTAGTCTTGATGCCGTTACCTCTACCTTCGATC 192010 Query 34570 TTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 |||| || | |||||| ||||| | |||||| || || Sbjct 192011 TTGGTCATCATCCTCGGCATCTTGTACCTGTAGAAGGCATC 192051 >seq7 Length=22597724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509 ||||| || ||||| || || |||||||| |||| |||| || || | || || ||| Sbjct 14357694 TGCGCTCCAAGCTCACAACCAAAGTACTTGGTCGTGTAAGAAGCAGGCCTCCCCAGAGCC 14357753 Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569 || || || ||| ||||||| ||| ||||||||||||||||| || ||||| | | Sbjct 14357754 TTTGCAATCTCGACGTTGTTGACAATGTTGGTCTTGATGCCGTTGCCTTTGCCTTCAATC 14357813 Query 34570 TTGG 34573 |||| Sbjct 14357814 TTGG 14357817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412639086874757