Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 188 1e-41 seq2 178 2e-38 seq25001 154 2e-31 seq4 120 5e-21 >seq6 Length=26286742 Score = 188 bits (208), Expect = 1e-41 Identities = 237/324 (73%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| ||| |||||| |||||| ||| | || |||||||| || |||||| Sbjct 22599637 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCCTCGCTTC 22599578 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||||| ||||| || || ||||| ||||| || || ||| ||||| Sbjct 22599577 TTCAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAAGCAAAC 22599518 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | |||| || |||||| ||||| | || || || |||||||||||| ||||| Sbjct 22599517 GCCACGATCCTCTCGGCGAAAGTCTG-AGATCC-----GTCGATCCACTTCATGGCCCAT 22599464 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| ||| || | || | || || || ||||| |||||||||||| |||| Sbjct 22599463 TGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGGTGGTCCCTCTCT 22599404 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| ||| ||||||| ||||| ||| ||||||||||||| || || Sbjct 22599403 TTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTACATCTCTGAGTGGATATTCTCA 22599344 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 || ||||||||||| || || ||| Sbjct 22599343 ATCGCGATCTGGAACCCGTAGAAG 22599320 Score = 174 bits (192), Expect = 2e-37 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| ||||| || || |||||| ||| ||| || ||||| ||||| ||| Sbjct 22599313 GCCTCGGAGACTTGCACGTCGGACATGAACCGGGAGGCGAGATTCTCTAAAACGATTCCG 22599254 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||| Sbjct 22599253 TCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTTGAGA 22599194 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 |||||| | ||||| ||| ||| ||||| || ||||||||||| || ||||| Sbjct 22599193 TTCTCCCAGTCGCGAGTGTCTTGCGA-GAGATCGACTTCTTCGGCGGTCCAGAAAGAGGC 22599135 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||||||| |||||||||||||| ||| | | ||| |||| ||||||| Sbjct 22599134 CTCGGCCTTCTTGTACATCTCCCAGATCTGCGGTTAGTGGATCGGGAACA 22599085 >seq2 Length=27864329 Score = 178 bits (196), Expect = 2e-38 Identities = 179/232 (77%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || || || || |||||| ||| ||| || ||||| ||||| ||| Sbjct 22153239 GCCTCGGAGACCTGCACGTCGGACATGAACCGGGAGGCGAGATTCTCGAGGACGATTCCG 22153180 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| ||||| ||||| |||||| ||||| |||| Sbjct 22153179 TCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGG 22153120 Query 796270 GAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | ||||| | ||||||||| |||||||||||||| |||||| Sbjct 22153119 TTGGTCTCCCAGTCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAG 22153060 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| || |||||||||||||| ||| | ||||| |||| ||||||| Sbjct 22153059 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGTGGATCGGGAACA 22153008 Score = 161 bits (178), Expect = 2e-33 Identities = 231/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||||| |||||| ||| ||| || |||||||| || |||||| Sbjct 22153563 CCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCTCGCTTC 22153504 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||||| || || ||||| ||||| || || ||| || ||| Sbjct 22153503 TTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCACGCGAAG 22153444 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | |||| || ||| || ||||| | || || | ||||||||||| ||||| Sbjct 22153443 GCCACGATCCTCTCTGCGAAAGTCT-GAGATCC-----ATCGATCCACTTCAAGGCCCAT 22153390 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| ||| || | || | || || || ||||| ||||| |||||| |||| Sbjct 22153389 TGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTCC 22153330 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| |||||| || | | ||| ||| |||| |||||||| || || Sbjct 22153329 TTGTTGTCCTTGATGTAGGTATCTAGCAAGAGGCTGTACATCTCCGAGTGGATATTCTCA 22153270 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 || ||||||||||| || || ||| Sbjct 22153269 ATCGCGATCTGGAACCCGTAGAAG 22153246 Score = 96.9 bits (106), Expect = 5e-14 Identities = 203/295 (69%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| || || || || |||| |||||||||||||||||||| ||||| || || Sbjct 22153852 CTCGAAGAAATTCGTTTTACCCTGAAGCGAGATCAACTCCATCCAATCAAACGGATTCGC 22153793 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | ||| |||| || |||| |||| || ||| || | || || || || |||| Sbjct 22153792 CACACCGTACACCTTCCCGTACCCAAGCGCACCCAA-AAGCCTATCCGCCACAAACTCAA 22153734 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 | ||||| | ||| | | | |||||| || | | ||| ||| |||| |||| | Sbjct 22153733 TATACTGACTCATCAAGTCCCGGTTCATCCCCACCAACGCGCAGGGAAGCGCGTCGCACA 22153674 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGAC 794162 ||||||| |||||||||| || || ||| | |||| | || | || || ||| Sbjct 22153673 CAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATC-GACTTCACGCGCTCCTCCGAT 22153615 Query 794163 GGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 |||| ||| | | || || |||| |||||| || |||||||| || || ||| Sbjct 22153614 AGCTTCGTCCTC-AACAAGGTATAGATCAGGCACGCGAAGTCGCAGTGAAGGCCT 22153561 >seq25001 Length=364 Score = 154 bits (170), Expect = 2e-31 Identities = 181/243 (74%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||| |||| || || ||| ||| Sbjct 339 TGTACTTGGTGACCGCCTTGGTACCTTCACTGACGGCGTGCTTGGCGAGCTCACCGGGCA 280 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | ||| | || | |||||| |||||||| ||| Sbjct 279 GCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGAGGTGATCGTCGAACGCTTGTTGTAGT 220 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | | | | || || | | |||| || |||| |||||||| || |||||||| Sbjct 219 GGGCGAGACGAGAC--GCTTCCGCGGCGATACGCTCGAAGATGTCGTTCACGAACGAGTT 162 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | || |||||| || ||||||||| |||||||| | |||||| Sbjct 161 CATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTT 102 Query 1485708 GTA 1485710 ||| Sbjct 101 GTA 99 >seq4 Length=18984343 Score = 120 bits (132), Expect = 5e-21 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||| || ||||||||||| || || |||||||||||| | || || || ||| | | | Sbjct 12916358 ACTTAGTAACGGCCTTGGTTCCTTCAGAGACGGCGTGCTTAGCGAGCTCACCGGGGAGAA 12916299 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | ||| ||||||||||||||||||| | ||||||| |||||| | || Sbjct 12916298 CGAGCCTCACAGCGGTCTGGATCTCGCGGGAGGTGATCGTGGGCTTCTTGTTGTACCTCG 12916239 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | || | |||||| | ||| |||| |||||||||| || |||||||| Sbjct 12916238 CGAGCTTGGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGA 12916179 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| | ||||| || | ||| ||||| |||||||| || |||||| Sbjct 12916178 TCCCCATGGCCTTGCTCGAGATCCCGATGTCAGGGTGGACCTGCTTCAGGACCTTG 12916123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911964930294311