Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 seq10 95.1 1e-14 seq6 89.7 4e-13 seq9 86.0 5e-12 seq8 86.0 5e-12 seq7 84.2 2e-11 >seq3 Length=31725688 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || |||||| | || || || ||||| ||| |||| |||| ||| Sbjct 13310744 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTC- 13310802 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| ||||| || || | || |||||| Sbjct 13310803 CGACACCATCGACAACGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCTCCGGATCA 13310862 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||| |||| |||| | ||| |||| |||||||| Sbjct 13310863 GCAGAGGCTTATCTTCGCCGGCAAGCAGTTGGAAGACGGGAGAACCTTGGCTGACTACAA 13310922 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||||||| | ||| |||| Sbjct 13310923 CATCCAGAAGGAGTCTACGCTTCACTTGGT 13310952 >seq10 Length=17599535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || ||||| |||||||| || || ||| | ||| ||| ||| Sbjct 17168592 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 17168651 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || |||||| || || ||||| | || ||| | Sbjct 17168652 A-GACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACC 17168710 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | |||||||| || | || ||||||||||| ||||| | | || |||| || |||| Sbjct 17168711 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACA 17168770 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||| || |||||||| || | ||| | |||||| | | || || |||| Sbjct 17168771 ACATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGAA 17168821 Score = 91.5 bits (100), Expect = 1e-13 Identities = 170/247 (69%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || || ||||| |||||| | || ||| ||| Sbjct 17168365 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACAATTACCTTGGAGGTTGAGAGCTCT 17168424 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| ||||||| || || |||||| | || || || Sbjct 17168425 -GACACGATTGACAACGTCAAAGCAAAGATTCAGGACAAGGAAGGCATCCCACCAGACCA 17168483 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| || | || || |||||||| ||||| | || | ||||| || || Sbjct 17168484 GCAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCGGATTATAA 17168543 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAA 107794 ||||| ||||||||||| | ||| | |||||| | | || || || ||| ||| Sbjct 17168544 TATTCAGAAGGAGTCTACCCTTCACCTTGTGTTGCGTCTCCGTGGTGG----AATGCAAA 17168599 Query 107795 TATTTGT 107801 ||||||| Sbjct 17168600 TATTTGT 17168606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||||| || ||||| ||||| ||| |||| ||| ||| Sbjct 17168137 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTTGAGAGCTC- 17168195 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || ||||| || || ||||| | || ||| || Sbjct 17168196 CGACACTATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 17168255 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || ||||| ||||| ||||| | ||| | || || ||||| Sbjct 17168256 GCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAGGATGGACGCACACTCGCTGATTACAA 17168315 Query 107735 CATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 17168316 TATCCAGAAGGAGTCTAC 17168333 >seq6 Length=26286742 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||||||||| ||||| || || || || ||||| | || |||| ||| Sbjct 15796956 ATGCAAATTTTTGTCAAGACTTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 15797015 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || |||||| ||||| || || | || ||| || Sbjct 15797016 -GACACTATTGATAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCA 15797074 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||||||||||| | | || | || |||||||| Sbjct 15797075 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 15797134 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 15797135 CATCCAGAAGGAGTCTAC 15797152 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || ||||| ||||| | || || || ||||| ||| | || ||| Sbjct 15796266 TTTCAGATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAA 15796325 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| || || ||| | | || ||| |||||| || || |||||| | || Sbjct 15796326 AGCTCT-GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCC 15796384 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||||||||||| || || | || || || ||| |||| |||| || || |||| || Sbjct 15796385 TGATCAGCAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGGACCTTGGCTGA 15796444 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| || || |||||||||||| | ||| |||| ||| Sbjct 15796445 TTACAATATCCAGAAGGAGTCTACGCTTCACCTGGTCTTG 15796484 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||||||||| ||||| || || || || ||||| | || |||| ||| Sbjct 15797184 ATGCAAATTTTTGTCAAGACTTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 15797243 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || |||||| ||||| || || | || ||| || Sbjct 15797244 -GACACTATTGATAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCA 15797302 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||| ||||||| | | || | || |||||||| Sbjct 15797303 GCAGAGGTTGATATTTGCCGGCAAGCAGTTGGAGGATGGAAGGACTCTAGCTGACTACAA 15797362 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||| || ||||| || | ||| |||| ||| Sbjct 15797363 CATTCAGAAAGAGTCGACTCTCCACTTGGTCTTG 15797396 >seq9 Length=37155481 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || || | ||||| || || || || | || |||| ||| Sbjct 16961155 ATGCAGATCTTCGTTAAGACACTGACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTCT 16961096 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || ||| |||||| ||||||||||| | || |||||| Sbjct 16961095 -GATACCATCGACAACGTTAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCAGGATCA 16961037 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | ||| ||||| ||||| || || | || | || |||||||| Sbjct 16961036 GCAAAGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGGCGTACCCTCGCTGACTACAA 16960977 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 ||||||||||||||| || ||||| Sbjct 16960976 CATTCAAAAGGAGTCAACTTTGCA 16960953 >seq8 Length=21613650 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | || || || || || ||| |||| ||| ||| Sbjct 12584792 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACGATCACCCTCGAGGTGGAAAGCTC- 12584850 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| ||||| ||||| |||||| | ||| |||||| Sbjct 12584851 CGACACCATCGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCCCCGGATCA 12584910 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || ||||| || |||| | ||| | || |||||||| Sbjct 12584911 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGTAGAACTCTCGCTGACTACAA 12584970 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||| ||| | ||| |||||||| Sbjct 12584971 CATCCAGAAGGAGACTAATCTCCACTTGGTGTTG 12585004 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || || || || || || ||| | || ||| | | Sbjct 12585020 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACGATCACCCTTGAGGTCGAGAGTTCC 12585079 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || ||| ||||| || || ||||| | || ||| ||| Sbjct 12585080 GACACAATCGACAACGTGAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCAG 12585139 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || || || ||||| || |||| | ||| |||| ||||||||| Sbjct 12585140 CAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGTAGAACTCTGGCTGACTACAAC 12585199 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||||||||| | ||| |||||||| | |||| || || Sbjct 12585200 ATCCAGAAGGAGTCTACTCTCCACTTGGTGTTGCGTCTGCGTGGAGG 12585246 >seq7 Length=22597724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| ||||| |||| || || || || ||| | || || | Sbjct 8143828 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCA 8143769 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || |||||| || || ||||| | || ||| Sbjct 8143768 TCCGACACGATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCGGAC 8143709 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || |||||||| |||| | || | ||||||||| Sbjct 8143708 CAGCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACGCTCGCGGACTAC 8143649 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| || |||||||| ||| | ||| ||||| | | || |||| ||| Sbjct 8143648 AACATCCAGAAGGAGTCGACGCTTCACTTGGTGCTCCGCCTGAGAGGAGGA 8143598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398681137093561