Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 5e-11 >seq2 Length=27864329 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||| |||||||||| | ||| | || || |||| | | ||||||||||||||||| Sbjct 6282071 ATTTGAAAAGAGCACATTAAACTCTCATCAACACTCATCATAGCACCAGCATTATCGAAT 6282012 Query 167265 TCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTC 167323 ||| | || ||||| || |||||||||| |||||| | | | || ||| || || Sbjct 6282011 TCAC-CACAGTAATTAGGAGCTGAAAATATAGTAACAAGCTGTCTATCCGCAAAGAACTC 6281953 Query 167324 ATAACCATCTTCAACAAC 167341 ||||||||| || ||||| Sbjct 6281952 ATAACCATCCTCTACAAC 6281935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186200772136289