Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 >seq3 Length=31725688 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 142534 AAGAAGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGAC 142593 ||||| |||| || ||| ||| ||| | | || ||||||||| |||| || | Sbjct 20592967 AAGAACAATCCTGATGATCGGCGTATCATATTATCTGCTTGGAACCCTTCTGACCTCAAG 20592908 Query 142594 GACATGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGT 142653 ||||| || |||||||| |||||| | || ||| | || | |||| | | Sbjct 20592907 CTGATGGCGCTGCCTCCGTGCCACATGTTTGCGCAGTTCTATGTGGCG--GAAGGGGAG- 20592851 Query 142654 CTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATT 142713 || ||||||||| ||||||||||||| || || | ||| || || ||||| |||||| Sbjct 20592850 CTCTCATGCCAGATGTATCAGCGTTCAGCGGATATGAGCCTTGGTGTGCCGTTTAACATT 20592791 Query 142714 GCTTCGTACGCGCTTCTCAC 142733 ||||| ||| | ||||| || Sbjct 20592790 GCTTCCTACTCTCTTCTTAC 20592771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500247392596240