Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq40249 592 5e-165 seq24705 562 9e-156 >seq40249 Length=153482 Score = 592 bits (656), Expect = 5e-165 Identities = 727/983 (74%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| || | ||||||||||| |||| |||||||| ||||||| Sbjct 1337 TAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1278 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | || | || ||||| ||||||||||| ||||| |||| Sbjct 1277 CCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAG 1219 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || |||||||| |||||||| || | Sbjct 1218 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTA 1159 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || || | || || ||||| || || Sbjct 1158 TTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTG 1101 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 ||||||| || ||||||||||||| |||||||| || || | |||| | || | Sbjct 1100 GGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCT 1041 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 ||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 1040 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 981 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 980 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 921 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| ||||||| || || || || |||| ||||||| | || |||| Sbjct 920 -TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 862 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| ||| | |||||||| || || || |||||||| |||||||| | Sbjct 861 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCAT 802 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | ||||| |||||||||||||| || || ||||| ||||| ||||| |||| Sbjct 801 TTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTT 742 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | ||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 741 C-TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 683 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || || ||||||||||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 682 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 623 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || |||||||||||||| ||| |||||||||| |||||| |||| |||||| | || Sbjct 622 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 563 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || |||||||| ||||| |||||||| |||| || || || ||| ||||| || || Sbjct 562 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 503 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| || | | || | | || ||||| ||| ||||| Sbjct 502 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 443 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| ||| | || |||||||| || || | || || ||||||||||| |||||| Sbjct 442 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 383 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 || |||||||| || ||||| || Sbjct 382 CACAACTTCCCTCTAGACCTAGC 360 >seq24705 Length=1162 Score = 562 bits (622), Expect = 9e-156 Identities = 711/969 (73%), Gaps = 9/969 (1%) Strand=Plus/Plus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| || | || |||||||| | || ||||| || ||||||| Sbjct 197 AACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 256 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 257 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 315 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | |||||||||||||| || || Sbjct 316 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 375 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || || | | || | | || || |||||| | ||||| |||||||||||| Sbjct 376 CTCTGGTGCTATTATCCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 433 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 434 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 493 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 |||| | | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 494 CACTCCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 553 Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 554 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT- 612 Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | | ||||| ||||||| || ||||| || |||| ||||||||| || ||||| Sbjct 613 TTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTC 672 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||||| ||| | |||||||| || || || |||||||| |||||||| || Sbjct 673 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 732 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||| | ||||| |||||||||||||| || || ||||| ||||| ||||| ||||| Sbjct 733 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 792 Query 20107 GCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTA 20166 | || || || | | |||| | || ||||||||| | ||| | || | ||||| Sbjct 793 TTTGGTAACTTC-TAGTTTGTCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTA 851 Query 20167 CAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACG 20226 ||| ||||| ||||| ||||| || ||||| || || || ||||||||||| ||||| || Sbjct 852 CAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCG 911 Query 20227 TTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 20286 || ||||||||||| ||| ||||||||| |||||| ||||||||||| | ||||| Sbjct 912 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGC 971 Query 20287 CTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCT 20346 ||||| || ||||| || |||||| |||| || || || ||| ||||| || || || Sbjct 972 TTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 1031 Query 20347 GAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTG 20406 || |||||||| || ||||| || | | || | | ||||| || ||| ||||||| Sbjct 1032 AAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTG 1091 Query 20407 GGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCA 20466 |||||| || |||| |||||||| || || | || || ||||| ||||| |||||||| Sbjct 1092 GGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCA 1151 Query 20467 TAACTTCCC 20475 |||||||| Sbjct 1152 CAACTTCCC 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148757666251842