Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 >seq3 Length=31725688 Score = 114 bits (126), Expect = 2e-20 Identities = 184/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||| |||||| | | || || || || ||||| | | || ||||| || || Sbjct 20592678 AGAGGCCTCACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCA 20592737 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || ||| | ||| || || | |||| | || || || |||||| || ||||| Sbjct 20592738 GGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTA 20592797 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || |||| ||| ||| | || | ||| |||| |||||| ||||||||||| Sbjct 20592798 AACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCT 20592857 Query 147100 TCGGCCACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT-GGCGGGCAGGT 147157 || ||||| || ||||| ||| | ||||||||||| ||||||||||| || | |||| Sbjct 20592858 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGCAGCGCCATCAGCTTG-AGGT 20592915 Query 147158 CCGCGGGGTTCCAGGCCGA 147176 | | |||||||| || || Sbjct 20592916 CAGAAGGGTTCCAAGCAGA 20592934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583194439893600