Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 340 3e-87 seq2 313 4e-79 seq25001 122 1e-21 seq4 91.5 2e-12 seq3 89.7 7e-12 >seq6 Length=26286742 Score = 340 bits (376), Expect = 3e-87 Identities = 419/562 (75%), Gaps = 13/562 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||| | || ||| ||||| |||||| || |||||||||||||| || Sbjct 22599085 TGTTCCCGATCCACTAACCGCAGATCTGGGAGATGTAC-AAGAAGGCCGAGGCCTCTTTC 22599143 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCC-GACACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||||||||| || ||||| ||| ||| ||||| | |||||| | || | ||| Sbjct 22599144 TGGACCGCCGAAGAAGTCGATCTCT-CGCAAGACACTCGCGACTGGGAGAATCTCAACGA 22599202 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 || |||||||| |||||||| |||||||||||||| || ||||||| ||| || |||| Sbjct 22599203 CGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGAATCG 22599261 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||||| || ||| ||| || ||| || || ||| | | ||||| ||| | Sbjct 22599262 TTTTAGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCT 22599321 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||||||||||||||| || || || |||||||| || | ||| |||||| ||| Sbjct 22599322 TCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCG 22599381 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 |||| ||| |||||||| |||| |||||||||||| ||||| || || || | | Sbjct 22599382 ACACGTACATCAAGGACAACAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATCC 22599441 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | || ||| |||||| | ||||| |||||||||||| || || ||| | | Sbjct 22599442 CTTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGAC-----GGATCTC-AGA 22599495 Query 1456172 CTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 |||| |||||| || |||| | ||||| |||| || || ||||| ||||| || || | Sbjct 22599496 CTTTCGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCT 22599555 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 ||||| ||||||| ||||| |||||||| || |||||||| ||| || ||| |||| Sbjct 22599556 TCTGCTCCATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGT-TTAACCTTCTCCAAC 22599614 Query 1456290 GAATTTATCAGTCGCGACGAAG 1456311 || || ||| ||| ||||||| Sbjct 22599615 GAGTTGATCTCTCGAGACGAAG 22599636 >seq2 Length=27864329 Score = 313 bits (346), Expect = 4e-79 Identities = 413/564 (73%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| |||||||| Sbjct 22153008 TGTTCCCGATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAG-CCGAAGCCTCCTTC 22153066 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 |||||||||||||| ||||||||| | ||||| | |||||| | | || | | Sbjct 22153067 TGGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGACCAACCTCAAC 22153126 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| ||||||||| |||||||| |||||||||||||| || ||||||| ||| || || Sbjct 22153127 GACGGCGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGAAT 22153185 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| |||||| || ||| ||| || ||| || || || | | ||||| ||| Sbjct 22153186 CGTCCTCGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGTGC 22153245 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||||||||||||||| || || || |||||||| || | ||| ||| || | Sbjct 22153246 CTTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGCCTCTTGCT 22153305 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 || |||||| |||||||| |||| |||||| ||||| ||||| || || || | Sbjct 22153306 AGATACCTACATCAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCAT 22153365 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | || ||| |||||| | ||||| ||||||||||| | || ||| | Sbjct 22153366 CCCTTGCGTCGCGAAGAAGGCCCAATGGGCCTTGAAGTGGATC-----GATGGATCTC-A 22153419 Query 1456170 CACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 ||||| || ||| || |||| | ||| || |||| || || ||||| ||||| || || Sbjct 22153420 GACTTTCGCAGAGAGGATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGAAG 22153479 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCA 1456287 |||||| ||||||| |||||||||||||| || |||||||| || | || ||| || Sbjct 22153480 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGC-TCACCTTCTCCA 22153538 Query 1456288 ACGAATTTATCAGTCGCGACGAAG 1456311 |||| | ||| || ||||||| Sbjct 22153539 ACGAGCTGATCTCGCGGGACGAAG 22153562 >seq25001 Length=364 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| |||||| |||| | ||| ||| ||| || Sbjct 96 ATCTACAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCCTCGAAGGCC 149 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| || |||| | | || || | Sbjct 150 ATGTCAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGCGGAAGCGTCT 209 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| |||||| | | | ||| | |||||| ||||| Sbjct 210 CGTCTCGCCCACTACAACAAGCGTTCGACGATCACCTCCAGGGAGGTGCAGACCTCCGTG 269 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| || || |||| |||||||||| || || |||| Sbjct 270 AGGCTCCTGCTGCCCGGTGAGCTCGCCAAGCACGCCGTCAGTGAAGGTACCA 321 >seq4 Length=18984343 Score = 91.5 bits (100), Expect = 2e-12 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || |||||||| ||||| || | | ||| ||| || | |||| || Sbjct 12916118 ATCTTCAAGGTCCTGAAGCAGGTCCACCCT-GA--CATCGGG--ATC-TCGAGCAAGGCC 12916171 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | |||||| Sbjct 12916172 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 12916231 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| | | ||||||| ||||||| | | ||||||||||||||||| ||| Sbjct 12916232 AAGCTCGCGAGGTACAACAAGAAGCCCACGATCACCTCCCGCGAGATCCAGACCGCTGTG 12916291 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| || || || | |||||||||||| || || |||| Sbjct 12916292 AGGCTCGTTCTCCCCGGTGAGCTCGCTAAGCACGCCGTCTCTGAAGGAACCA 12916343 >seq3 Length=31725688 Score = 89.7 bits (98), Expect = 7e-12 Identities = 129/177 (73%), Gaps = 9/177 (5%) Strand=Plus/Plus Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||||||||||||||| || || ||| ||| ||| || ||| || | ||| | Sbjct 18728119 TGGGCGATGAAGTGGATCGAC-----GGATCTCAGAC-CTTCGCGGAGAGGAGCATCGCC 18728172 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 || ||| ||| | || ||||| ||||| || || |||||| | ||||| ||||||||| Sbjct 18728173 TTCGCCTGCGCATAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAG 18728232 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || || || || ||||| ||| || ||| |||||| || ||| ||| ||||| Sbjct 18728233 AAACGAGGGCTTATGCCTGGT-TTGACCTTCTCCAACGAGTTGATCTCTCGAGACGA 18728288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173929109972338