Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq24705 580 1e-160 seq40249 574 6e-159 seq27683 212 8e-50 seq10 147 3e-30 seq13684 125 9e-24 seq3029 116 4e-21 seq9 107 2e-18 seq34986 96.9 4e-15 seq34187 84.2 3e-11 seq3 82.4 9e-11 >seq24705 Length=1162 Score = 580 bits (642), Expect = 1e-160 Identities = 714/972 (73%), Gaps = 3/972 (0%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 191 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 250 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| ||||| || || |||||||| ||||||| || Sbjct 251 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 309 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 310 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 369 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 370 TATTATCTCTGGTGCTATTATCCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 429 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 430 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 489 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||| | | ||||| | | || ||||| ||||||||||||||| | ||| Sbjct 490 TCTACACTCCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 549 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | | |||||||| || ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 550 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 609 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 || ||| || | || ||| | |||||||| |||||||| | ||||| | || || Sbjct 610 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 669 Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387 ||||||||| ||||||| ||| |||| ||||| || || ||||||||||| |||||||| Sbjct 670 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 729 Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447 || |||||||| ||||| || ||||||||||| || || || || ||||| ||||| || Sbjct 730 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 789 Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507 ||||||||| || || | | || | ||||| ||||||| ||||| || | || Sbjct 790 TTCTTTGGTAACTTC-TAGTTTGTCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGG 848 Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567 ||| || || || ||||| ||||| || || || || || || || ||||| || || || Sbjct 849 TTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGG 908 Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627 || || ||||||||||||||| ||||||||||| ||||| | ||||||||| | || Sbjct 909 CCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGC 968 Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687 || ||||||||||| |||||||||||||| || | || | || || ||||| || || Sbjct 969 TGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 1028 Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747 ||| ||||| ||||| |||||||| || | | || | ||||| || || | || || Sbjct 1029 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATAC 1088 Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807 ||||| || | |||||||||| || || |||||||| |||||||| || || || Sbjct 1089 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGC 1148 Query 178808 GCACAACTTCCC 178819 ||||||||||| Sbjct 1149 TCACAACTTCCC 1160 >seq40249 Length=153482 Score = 574 bits (636), Expect = 6e-159 Identities = 723/993 (73%), Gaps = 0/993 (0%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| | ||| ||||| ||| | ||||| || || | || ||||| || || || Sbjct 1342 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1283 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 177968 ||||| || || | ||| | |||||| | ||| || |||| ||| | |||||||| Sbjct 1282 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1223 Query 177969 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAAC 178028 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1222 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1163 Query 178029 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 178088 || || || ||||| || |||| |||| || |||||| | || || || || ||| Sbjct 1162 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1103 Query 178089 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTA 178148 |||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | || Sbjct 1102 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1043 Query 178149 TTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGT 178208 | ||||| | ||||| | | || ||||| ||||||||||||||| | |||| Sbjct 1042 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 983 Query 178209 TTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCA 178268 | |||||||| || ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 982 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 923 Query 178269 GTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATC 178328 || ||| || |||| || | |||||||| |||||||| | ||||| || || ||| Sbjct 922 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 863 Query 178329 TCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCC 178388 |||||||| ||||||| ||| |||| ||||| || || ||||||||||| |||||||| Sbjct 862 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 803 Query 178389 TTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGT 178448 || |||||||| ||||| || ||||||||||| || || || || ||||| ||||| ||| Sbjct 802 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 743 Query 178449 TCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGT 178508 |||||||| || ||| | | | ||||| || |||| ||||| || | ||| Sbjct 742 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 683 Query 178509 TATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGT 178568 || | ||||| ||||||||||| || |||||||| || || || || || || || || Sbjct 682 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 623 Query 178569 CGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCA 178628 || |||||||||||||||||| |||||||| || ||||| | || |||||| | || Sbjct 622 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 563 Query 178629 GCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAAC 178688 || ||||| ||||| || || ||||| || || | || | || || ||||| || ||| Sbjct 562 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 503 Query 178689 CTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACA 178748 || ||||| ||||| |||||||| || | | || | ||||||||||| | || || Sbjct 502 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 443 Query 178749 TGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCG 178808 ||||| || | | |||||||| || || |||||||| ||||| || || || || Sbjct 442 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 383 Query 178809 CACAACTTCCCGCTTGATCTTGCAGCAGCTGAG 178841 ||||||||||| || || || || || | |||| Sbjct 382 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 350 Score = 482 bits (534), Expect = 3e-131 Identities = 709/1001 (71%), Gaps = 2/1001 (0%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 31945 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32004 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 32005 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32064 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412 |||| || || || | |||||||||||| | || ||| || ||| | || || || | Sbjct 32065 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 32124 Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 32125 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 32184 Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532 | || |||| || ||||| ||| | || || || ||| ||| || |||||||||| Sbjct 32185 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 32244 Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGT 179591 |||| ||||| | || ||||| ||| | | ||||||||||||||||| ||| | | Sbjct 32245 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 32304 Query 179592 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTC 179651 | ||||||| ||||| || || || |||||||| |||||||| || || ||| || Sbjct 32305 TGC-GACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 32363 Query 179652 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 179711 || || ||||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 32364 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 32423 Query 179712 ATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCAT 179771 || || | ||| | || || | || || || || || ||||| | ||||| || ||| Sbjct 32424 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 32483 Query 179772 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACT 179831 ||||||||||| |||||| |||| || | || ||| | | ||||| ||||| | |||| Sbjct 32484 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 32543 Query 179832 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCG 179891 ||||| ||||| || | ||||||||| || |||||||| || || ||| | | Sbjct 32544 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 32603 Query 179892 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 179951 || || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| Sbjct 32604 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 32663 Query 179952 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180011 || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 32664 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 32723 Query 180012 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180071 ||| |||||| || |||| | | ||||| ||| | ||||| ||||| || || Sbjct 32724 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 32783 Query 180072 TTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAG 180131 ||||| ||||| ||| | ||||| |||||||| || |||||||| ||||| || || Sbjct 32784 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 32843 Query 180132 AACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAG 180191 || |||||| | || ||||| | || || ||| |||| | ||||| || ||||| Sbjct 32844 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 32903 Query 180192 TCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | ||||||| || || ||||| ||| | || || || Sbjct 32904 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 32944 >seq27683 Length=354 Score = 212 bits (234), Expect = 8e-50 Identities = 258/352 (73%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 179620 CTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTT 179679 ||||||| |||||||| || || ||| ||||| || ||||| |||| || || || Sbjct 354 CTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTT 295 Query 179680 GGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGG 179739 |||| || |||||| ||||| || || ||||| || | ||| | || ||| | || | Sbjct 294 GGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTTCCAAG 235 Query 179740 GTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAG 179799 | || || || |||||| | ||||| || ||||||||||||||||| || || |||| | Sbjct 234 GATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGTG 175 Query 179800 GAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAG 179859 || ||||| | ||||| ||||||| || ||||| || || | | ||| || || | Sbjct 174 CGGCTCTGCTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTG 115 Query 179860 AACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGG 179919 | ||||||||||| || ||| | | || || | ||||| |||||||| |||| Sbjct 114 ATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGG 55 Query 179920 TCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAA 179971 ||||||| |||||||| ||||| || ||||| ||| |||| ||||| || || Sbjct 54 TCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAA 3 >seq10 Length=17599535 Score = 147 bits (162), Expect = 3e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385 ||||||||||| ||||||| ||| |||| |||| || || ||||||||||| |||||| Sbjct 16803128 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCCGGCTGAGCACAACATTCTTATGCAC 16803187 Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCAC 178445 || || ||||| || ||||| | ||||||||| ||||||| | || |||| ||| | Sbjct 16803188 CCATTTCACATATTAGGTGTAGTTGGTGTATTCAGTGGTTCCTTATTTAGTGTTATGTAT 16803247 Query 178446 GGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTAT 178505 |||| |||||| || ||| | || | |||| || ||| ||||| ||| | Sbjct 16803248 GGTTTTTTGGTAACTTCTAGTTTAATTAGGAAAACCACAAAAAATGAATCTGCTAACGAA 16803307 Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGT 178546 |||||| ||||| ||||||||||| || |||||||| || Sbjct 16803308 AGTTATAGATTCGGTCAAGAAGAAGAAACTTACAACATTGT 16803348 >seq13684 Length=3594 Score = 125 bits (138), Expect = 9e-24 Identities = 182/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 179976 TGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGC 180035 ||| | ||||| || ||| | ||||| || || | ||| |||||| |||||||| Sbjct 3 TGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGC 62 Query 180036 ATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCA 180095 | |||| | ||||| ||| | ||||| || || || || ||||| ||| | ||| Sbjct 63 GTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCA 122 Query 180096 GCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTA 180155 || |||||||| || |||||||| ||||||||||| || |||||| | || || || | Sbjct 123 GCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATT 182 Query 180156 CGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTT 180215 ||||| ||| ||||| | ||||| || ||||| | ||||||| || || ||| Sbjct 183 CGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTT 242 Query 180216 CTGCCAAGAGGTAATGC 180232 || ||| | || || || Sbjct 243 CTACCACGTGGAAACGC 259 >seq3029 Length=7874 Score = 116 bits (128), Expect = 4e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | | |||| || || || ||||| || |||||||| || | || Sbjct 249 TGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 190 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 189 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 130 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTT-ACGGCAGCT 179411 |||| ||||| || | |||||||||||| | || ||| ||| |||||| || ||||| Sbjct 129 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCA 71 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 179467 || || || ||||| || | | | || ||| | | ||||| ||||| || || Sbjct 70 GTTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCCGA 15 >seq9 Length=37155481 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| |||||||| || |||||||| | || | ||||||||| ||||| ||| ||| Sbjct 8544650 TCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTT 8544591 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || ||||| || ||| | | | ||||| |||||| ||| ||| ||| ||||| Sbjct 8544590 GCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTTTGTTGACCAGTCTGACCAGAGTTTCC 8544531 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTG 176529 | |||||||| || |||| | || ||| |||| ||||| | ||||||||||| || Sbjct 8544530 TCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCACTTGTGCGGCTTATCCTACTTCTG 8544471 Query 176530 AT 176531 || Sbjct 8544470 AT 8544469 >seq34986 Length=93546 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||||||||||||||| ||||| || | || | ||||||||| ||||||||| | | Sbjct 33510 TCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCCT 33569 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || ||||| || ||| | | | ||| |||||||| ||| ||| ||| ||||| Sbjct 33570 GCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 33629 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACT 176525 | |||||||| || |||| || || |||| ||||| | |||||| |||| Sbjct 33630 TCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCTTACT 33685 >seq34187 Length=13517 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 179516 TTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACT 179575 ||| || |||||||||||||| ||||| | || ||||| ||| | | ||||||||||| Sbjct 530 TTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACT 471 Query 179576 TGCTCG-CCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGC 179632 |||||| ||| || | ||||||| ||||| || || || |||||||| ||||| Sbjct 470 TGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 414 >seq3 Length=31725688 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 || || ||||| || | || || |||||||||||||| || || | ||||||||| Sbjct 11490025 GACGACCAGTACATATTGGATGCGGCTGAAGAAGCAGGAGTTGACTTGCCTTACTCTTGC 11490084 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456 | |||||||| ||||| | || ||||| || | ||||| || ||||| ||| | Sbjct 11490085 AGAGCTGGTGCGTGTTCCACCTGCGCTGGTAATATCGAGAGAGGCCAAGTTGACCAGTCT 11490144 Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCT 176516 ||| || || || || |||||||| || || |||| | | ||||||| || || Sbjct 11490145 GATGGTTCGTTTCTTGAGGATGATCACATGGAGAAAGGTTATGTCTTGACTTGTGTGGCT 11490204 Query 176517 TATCC 176521 || || Sbjct 11490205 TACCC 11490209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605704708995120