Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 seq8 118 1e-21 >seq6 Length=26286742 Score = 123 bits (136), Expect = 3e-23 Identities = 363/555 (65%), Gaps = 6/555 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||| || |||| | || || ||||| || || || | Sbjct 22599659 GCAGGCGAAGTCGCAGTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAA 22599600 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || || ||||| || ||||| || |||| |||| ||| ||| || |||| Sbjct 22599599 ACCCGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATGG-AGCAGAAGCTTCCGGAGAAGA 22599541 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATCATTATG 39792 |||| ||||| || ||||| || || | ||||| || || || ||| | Sbjct 22599540 AGATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGATC--CGTC 22599483 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||||||| ||||| | || |||||| || ||||| || ||||| || || Sbjct 22599482 GATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCG 22599423 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||| | | | || | | || || | || || || | | || || ||||| Sbjct 22599422 GAAGAGGTGGTCCCTCTCTTTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTACAT 22599363 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 ||||| ||||| || |||||||| ||||| || ||||| || | || || | | Sbjct 22599362 CTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGAC 22599303 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| || || || || | || | ||| || || ||||| || ||||| Sbjct 22599302 TTGCACGTCGGACATGAACCGGGAGGCGAGATTCTCTAAAACGATTCCGTCGGAGGCGGC 22599243 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC 40092 || || || | || ||||| || || | || || | | || | |||||| Sbjct 22599242 GAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTTGAGATTCTCCCAGTC 22599183 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 | |||| || | ||| |||||||| || ||||| || || ||||| ||||| || Sbjct 22599182 GCGAGTGTCTTGCGAGAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTT 22599123 Query 40153 GTACATGTTCCATAT 40167 |||||| | ||| || Sbjct 22599122 GTACATCTCCCAGAT 22599108 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | || | ||||| | ||| | || | |||||| |||| ||||||| Sbjct 24943936 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACCA 24943995 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||||||| ||||| || ||| ||| |||||||| | || || || || || ||| Sbjct 24943996 TTAGATTCCCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGAA 24944055 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || || || || ||| || | ||||| ||||||||| ||||| || Sbjct 24944056 ACACCAATACCCCCAGCTGACTTACTTATAACCGCACACTCTTTCAATGTATCATAAATC 24944115 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 24944116 CCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 24944156 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| | ||||| | || ||||| || |||||||||||| | ||| | | || Sbjct 24944257 AGTTCCAGAGTTAAAGAGGGTCGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATG 24944316 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| || | | |||||| || |||||| | |||||| || | | || | ||| | Sbjct 24944317 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 24944376 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| |||||||| | ||| || ||| || | |||||| ||||||||| | || || Sbjct 24944377 CATGTGCTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 24944436 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| || || ||||| |||| ||| |||||| | |||||||| || Sbjct 24944437 AGTCTTGAATCCAAAGTAGTCATATTCAAAGTCACGGTCGTAAATGAT 24944484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||| ||| | ||||| || |||||| || || | | |||||||||| || || Sbjct 24942143 TAAGACTCTGCGACTATAAATGTTTGAGGTATACGGCTCAAAACATTCATTATTCCCAAG 24942202 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 ||| || ||||| ||||||||||| ||||| || || | | |||||||| |||| Sbjct 24942203 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCTACTAAAAGAGAATTTCTAATTCCATT 24942262 Query 68853 TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCA 68912 | || ||||| | ||| ||| ||||| |||| || || | |||||||| Sbjct 24942263 CTTCGAAATCATATCTCTGAGAGCAGCCCAGTCCCAGCGATCCGAAGGAATCACATTCCA 24942322 Query 68913 AAGATCGTATTGTAGAATTCC 68933 | || ||||||||| || Sbjct 24942323 CATGTCAGGTTGTAGAATACC 24942343 >seq8 Length=21613650 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||| | ||| | || | |||||| |||| |||||| Sbjct 16023299 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 16023358 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| || || || || || Sbjct 16023359 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 16023418 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || |||| || | ||||| |||||| || |||||||| Sbjct 16023419 AACACCGATACCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAACGTATCATATAT 16023478 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| ||||||||||| ||||| Sbjct 16023479 TCCCTCGATGCTATCATCCTTCATG 16023503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686563207596360