Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq3 89.7 4e-13 >seq1 Length=28635137 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || || || ||| ||| || ||||| || | ||| | | |||||||| | || || Sbjct 1752180 CGCCGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGCTGATGGCACTTCCTCCA 1752239 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| ||||||||||||| ||||| || || ||||||||| ||||||| Sbjct 1752240 TGCCACATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTTTCATGTCAAATGTATCAG 1752299 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 | |||| ||| ||||| || || || ||||||||||| || Sbjct 1752300 CGCTCAGCTGATATGGGTCTGGGTGTACCGTTTAACATCGC 1752340 >seq3 Length=31725688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| || || |||||| ||| || ||||| || | ||| | | |||||| Sbjct 29591528 ATCCTGATGATCGCCGGATAATAATGTCAGCTTGGAATCCTTCTGACCTTAAGCTGATGG 29591469 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || ||||| || |||| |||||||||||| || || || || || |||| Sbjct 29591468 CACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCGTGTC 29591409 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 29591408 AAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGC 29591357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397261034045245