Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq6 105 2e-17 >seq6 Length=26286742 Score = 105 bits (116), Expect = 2e-17 Identities = 315/477 (66%), Gaps = 22/477 (5%) Strand=Plus/Plus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 || ||| | ||| ||||| | || | |||||||| || | |||||| ||||| Sbjct 22599207 GAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTTTTA 22599266 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 |||||||| | | || ||| | ||| || ||| | ||||||| || |||| Sbjct 22599267 GAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAAGTCT---CCGAGGCGCGTGCCTTC 22599323 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| |||||| ||| || ||||| || ||| | ||| | ||||| | || || | Sbjct 22599324 TACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTC--G 22599381 Query 443583 ACAC-TAATTCCGAACGAAGACGAACAGCGGT-CCATCTTCTCATCGTTCATGA--CCAC 443638 |||| || || || || || || || || ||| || || || ||| ||| Sbjct 22599382 ACACGTACATC--AAGGACAACAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCAT 22599439 Query 443639 GCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAG 443698 || || || | | ||| | | ||||| | ||||| |||| || |||||| Sbjct 22599440 CCCTTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA-----TCTCAG 22599494 Query 443699 C--TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGC 443756 |||| |||| | | || || |||||| || ||||| | || || ||| ||| Sbjct 22599495 ACTTTCGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGC 22599554 Query 443757 TTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAA 443816 || || |||||||||||| |||| ||||| || || |||| ||| | ||||| || Sbjct 22599555 TTCTGC-TCCATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAA 22599613 Query 443817 CGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACAC 443873 ||| ||||| ||| ||||| || | || |||||||||||||| || |||| || Sbjct 22599614 CGAGTTGATCTCTCGAGACGAAGGCCTTCACTGCGACTTCGCCTGCCTGATCTATAC 22599670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587516910511805