Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8 140 4e-28 seq10 125 9e-24 seq7 116 5e-21 seq6 113 6e-20 seq5 95.1 2e-14 seq2 95.1 2e-14 >seq8 Length=21613650 Score = 140 bits (154), Expect = 4e-28 Identities = 301/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | |||| ||||| ||||| | | |||||| || Sbjct 20963978 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 20963919 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| ||| | || ||||| | | ||||| ||||||||||| || | | ||||| Sbjct 20963918 GCAACAACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTC 20963859 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC-AGCACTG-----CGTTGCTTG 11623 | ||| || ||||| |||||||| || ||||| | | ||| | ||| | Sbjct 20963858 AATGTCTGCTCTCTTTCATCATTCCCT------CCACCAATCCCTGTCCCTCTCTGCCTA 20963805 Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || ||||||||||| || | ||||||||||| || ||| || || | | Sbjct 20963804 CCAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTCTTG 20963745 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || ||||| || ||||| ||| || ||||||||||||||||| ||||| | | | Sbjct 20963744 AAAAGATCACGCACCCTCGAGGCCCCAACACCAACAAACATCTCAACAAACTCAGACCCC 20963685 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 ||| || ||| || ||| | ||||| || |||||| ||| | ||| || || Sbjct 20963684 GAGATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGCGTTTTA 20963625 Query 11804 CCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAA 11863 || || || || ||| ||||||| | ||| ||||||| ||||| || Sbjct 20963624 CCAGTCCCAGGAGGACCAACGAGAAGAACACCTTTGGGGATCCGAGCACCGACCGCAGTG 20963565 Query 11864 TATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||||||||| ||||| Sbjct 20963564 AACCTCTCAGGCTTCTTGAGAAACTCCAC 20963536 >seq10 Length=17599535 Score = 125 bits (138), Expect = 9e-24 Identities = 296/445 (67%), Gaps = 4/445 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | | | |||| ||||| ||||| | | || || || Sbjct 1381306 CGGTCAAAACGGCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 1381247 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| ||| | || ||||| | | ||||| ||||||||||| || | | |||||| Sbjct 1381246 GCAACAACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAAAGCTGATTA 1381187 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACC 11629 | || |||||||| |||||||| || | ||||| | | |||| | ||||| Sbjct 1381186 AGCGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCCACA 1381127 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||| |||||||| | ||||||||||| || || || ||| ||| || ||| Sbjct 1381126 GCATCTATCTCATCCACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAAAGA 1381067 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || ||||| ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 1381066 TCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG--A 1381009 Query 11750 TGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| | ||| || || | |||||| || ||||| || | ||| || || || | Sbjct 1381008 TGGAAAAGAACGGTACGCCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCCAG 1380949 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 |||| || ||| |||| || | ||| |||||| ||||| || | | Sbjct 1380948 TACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAACC 1380889 Query 11868 TCTCGGGTTGCTTGAGAAAATCCAC 11892 |||| || | ||| ||||| ||||| Sbjct 1380888 TCTCAGGCTTCTTCAGAAACTCCAC 1380864 >seq7 Length=22597724 Score = 116 bits (128), Expect = 5e-21 Identities = 217/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || || || |||||||| || || || ||||||||||| || Sbjct 17639109 AAACCCATCCATCTCAGTCAGCAACTGATTAATCGTCTGCTCCCTCTCATCATTCCCT-- 17639166 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| |||||||||||||| || || |||||| Sbjct 17639167 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATA 17639226 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | || | ||||| | ||| | |||||| ||||||||||||| Sbjct 17639227 CAAGGCGCCTTAGCCTTCGCCTTCTCAAACAAATCCCTAACCCTAGAGGCACCCACACCA 17639286 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || || | ||| ||||| | | || | ||| || ||| || || | || || Sbjct 17639287 ACGAAAAGCTCAACAAACTCAGACGCCGCGCAGGAGAAGAACGGCACTCCAGCCTCTCCA 17639346 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 || | |||| || | || ||||| || || || || |||| |||| || ||| Sbjct 17639347 GCCACAGCTCTAGCTAAAAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGAGACAACCT 17639406 Query 11837 CGGGGGATCTTGGCACC 11853 ||| |||||||| || Sbjct 17639407 TTGGGAATCTTGGCGCC 17639423 >seq6 Length=26286742 Score = 113 bits (124), Expect = 6e-20 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || ||||| || || | || || |||||| || ||| |||||||| || Sbjct 22599644 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCC 22599585 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 22599584 TCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22599525 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 |||||||| | | | |||||||| | |||| | | || | ||| ||||| || Sbjct 22599524 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 22599468 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| ||||||||| Sbjct 22599467 CCATTGGGCCTTCTTC 22599452 >seq5 Length=23960834 Score = 95.1 bits (104), Expect = 2e-14 Identities = 244/371 (66%), Gaps = 12/371 (3%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| || ||||| | | | ||| ||||| || || | | ||| || || Sbjct 7217349 CGGTCAAACCGTCCCGGCCTCAACAAAGCGGAGTCAAGAATGTCTGCTCTATTGGTCGCA 7217408 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| ||| | || ||||| | | ||||| ||||||||||| || | | || || Sbjct 7217409 GCAACAACGATGATACCAGTGTTACCTTCAAACCCATCCATCTCAGTTAACAGCTGGTTC 7217468 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC-AGCACTG-----CGTTGCTTG 11623 | || ||||||||||||||||| || ||||| | | ||| | ||| | Sbjct 7217469 AAAGTCTGTTCTCTCTCATCATTACCT------CCACCGATCCCTGTCCCTCTCTGCCTC 7217522 Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || |||||||||||||||| ||||| || || || || || || | | Sbjct 7217523 CCAACAGCATCAATCTCATCAACAAAGACGATGCAAGGAGCGTTCTCCTTAGCCTTCTTG 7217582 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || ||||| || ||||| ||||| ||||| ||||||||||| ||||| | | | Sbjct 7217583 AAAAGATCACGGACCCTGGAAGCACCAACACCGACAAACATCTCAACAAACTCGGACCCG 7217642 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 ||| || ||| || || | |||||| || || ||| || || || ||||| Sbjct 7217643 GAGATAGAGAAGAACGGCACGCCAGCTTCACCAGCTATAGCTTTCGCCAGAAGCGTCTTC 7217702 Query 11804 CCCGTACCTGG 11814 || ||||| || Sbjct 7217703 CCAGTACCAGG 7217713 >seq2 Length=27864329 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || || || || || || || || |||||| || || |||||||| || Sbjct 22153570 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 22153511 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 22153510 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22153451 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 ||| || || | | | || ||||| | |||| | |||| | ||| |||| || Sbjct 22153450 CGCGAAGGCCACGATCCTCTCTGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAGGC 22153394 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| ||||||||| Sbjct 22153393 CCATTGGGCCTTCTTC 22153378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627716029250400