Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq6 113 6e-20 seq8 100 4e-16 seq10 93.3 5e-14 seq3 86.0 8e-12 >seq2 Length=27864329 Score = 122 bits (134), Expect = 1e-22 Identities = 191/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 22153570 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 22153511 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || || || |||||||||||||| ||||| || Sbjct 22153510 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22153451 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 |||||| || | || | ||| || || | | || | ||| | |||||||| || Sbjct 22153450 CGCGAAGGCCACGATCCTCTCTGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAGGC 22153394 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 22153393 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 22153334 Query 130267 TTC--TGATGGATCTTTGATGTACTTATCTA 130295 || || || || |||||||| |||||| Sbjct 22153333 CTCCTTGTTG--TCCTTGATGTAGGTATCTA 22153305 >seq6 Length=26286742 Score = 113 bits (124), Expect = 6e-20 Identities = 186/265 (70%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| || ||||| | || || |||||| | ||| |||||||| || Sbjct 22599644 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCC 22599585 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| |||||| || | || || || |||||||||||||| ||||| || Sbjct 22599584 TCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22599525 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 || ||||| | || | ||| || || | | || | || | ||||||||| || Sbjct 22599524 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 22599468 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTT 130263 ||| || ||||| ||| ||| || |||| ||| | ||||| |||| | ||| | Sbjct 22599467 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGGTGGTCCCT 22599408 Query 130264 CTTTTCTGATGGATCTTTGATGTAC 130288 || || || || || ||||||||| Sbjct 22599407 CTCTT-TGTTG--TCCTTGATGTAC 22599386 >seq8 Length=21613650 Score = 100 bits (110), Expect = 4e-16 Identities = 274/412 (67%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| | || | |||| |||||| |||||| | || || || Sbjct 20963978 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 20963919 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || | |||| | || || |||| ||||| |||||||||||||||||||| ||| Sbjct 20963918 GCAACAACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 20963862 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTTA 14236 || | || || || | |||||||||| | |||| || | | | ||| || Sbjct 20963861 TTCAATGTCTGCTCTCTTTCATCATTCCC---TCCACCAATCCCTGTCCCTCTCTGCCTA 20963805 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAACTTC 14295 || || || ||||| || || | || || ||||| || ||| | | | | ||| Sbjct 20963804 CCAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTCTTG 20963745 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 ||| | ||| ||||| ||| ||| || ||||| ||||||||||| ||||| | | | Sbjct 20963744 AAA-AGATCACGCACCCTCGAGGCCCCAACACCAACAAACATCTCAACAAACTCAGACCC 20963686 Query 14356 GGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 | | || | || ||| || || | ||||| || |||||| ||| | ||| || | Sbjct 20963685 CG-AGATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGCGTTT 20963627 Query 14415 TCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 | || ||||| || || ||||||| |||| ||||||| ||||| Sbjct 20963626 TACCAGTCCCAGGAGGACCAACGAGAAGAACACCTTTGGGGATCCGAGCACC 20963575 >seq10 Length=17599535 Score = 93.3 bits (102), Expect = 5e-14 Identities = 326/500 (65%), Gaps = 22/500 (4%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| | | | |||| |||||| |||||| | ||| || || Sbjct 1381306 CGGTCAAAACGGCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 1381247 Query 14123 GCGATGACAACGATG---CCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGT 14176 || | ||||||| || || |||| ||||| ||||||||||| ||||| || Sbjct 1381246 GCAA---CAACGATAACACCAGT---GTTACCTTCAAAACCATCCATCTCCGTCAAAAGC 1381193 Query 14177 TGATTGATGGTTTGTTCGCGTTCATCATT---CGCAGGCATACCACCCGCACTGCGTTGC 14233 ||||| | || ||||| | ||||||||| || |||||| | | | |||| Sbjct 1381192 TGATTAAGCGTCTGTTCTCTTTCATCATTACCTCCACCAATACCA---GTTCCTCTTTGC 1381136 Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACT 14293 |||| || || || || ||||| | || || ||||| || || || ||| | Sbjct 1381135 CTACCCACAGCATCTATCTCATCCACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTT 1381076 Query 14294 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 14353 | || | ||| || || ||| ||||| ||||| ||||||||||| ||||| | | Sbjct 1381075 TTGAAAAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAA 1381016 Query 14354 GCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 14412 | | | || | | ||| || ||| || |||||| || ||||| || | ||| || Sbjct 1381015 CCCG-AGATGGAAAAGAACGGTACGCCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGT 1380957 Query 14413 CTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGC 14471 ||||| || || || || |||| || |||| ||||||| ||||| || | Sbjct 1380956 TTTCCCAGTACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCGAGCACCGACCG- 1380898 Query 14472 CAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGG 14531 || | | | ||||| | || || || ||||| | ||| || || | ||| || Sbjct 1380897 CAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAGTCTTGCTTGGCTT 1380838 Query 14532 CGTCGATGCCTTCAACGTCA 14551 | |||| || |||||||| Sbjct 1380837 CATCGACTCCAGCAACGTCA 1380818 >seq3 Length=31725688 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | || || |||||| || ||| ||||| || || || ||| Sbjct 18728291 CCATCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATAAGCCCTCGTTTC 18728232 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| |||| || || || |||||||||||||| | | || ||||| Sbjct 18728231 TTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTATGCGCAGGCGAAG 18728172 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | | | ||| || |||| | || | || | |||||||||||||||||| Sbjct 18728171 GCGATGCTCCTCTCCGCGAAGGTCTGAGA---TCCGTCGATCCACTTCATCGCCCACTGA 18728115 Query 130214 GCCTT-TTTCTCGATACACGGGACG 130237 || || |||| ||| || || ||| Sbjct 18728114 GCTTTCTTTCGCGAAGCAAGGAACG 18728090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618124057520440