Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8 122 1e-22 seq2 120 4e-22 seq10 114 2e-20 seq6 114 2e-20 seq7 111 2e-19 seq5 105 8e-18 seq3 105 8e-18 >seq8 Length=21613650 Score = 122 bits (134), Expect = 1e-22 Identities = 305/457 (67%), Gaps = 16/457 (4%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| |||||| | | ||| || || Sbjct 20963978 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 20963919 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | |||| || ||| || | | ||||| ||||||||||| ||||| || || || Sbjct 20963918 GCAACAACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTC 20963859 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTT 9697 | || || || | |||||||||| || ||||| | | ||| | ||| | Sbjct 20963858 AATGTCTGCTCTCTTTCATCATTCCCT------CCACCAATCCCTGTCCCTCTCTGCCTA 20963805 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTC 9756 || || ||||||||||| || | ||||| || || || ||| || || | ||| Sbjct 20963804 CCAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTCTTG 20963745 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 ||| ||||| || || | | ||| || ||||||||||||||||| ||||| | | | Sbjct 20963744 AAA-AGATCACGCACCCTCGAGGCCCCAACACCAACAAACATCTCAACAAACTCAGACCC 20963686 Query 9817 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9875 | | || | || ||| || ||| | ||||| ||||||||| ||| | || || | Sbjct 20963685 CG-AGATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGCGTTT 20963627 Query 9876 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAA 9935 |||| || || || ||| |||| || ||||| || ||| || || || Sbjct 20963626 TACCAGTCCCAGGAGGACCAACGAGAAGAACACCTTTGGGGATCCGAGCACCGACCGCAG 20963567 Query 9936 AGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | | |||||||| | ||| ||||| ||||| | ||| Sbjct 20963566 TGAACCTCTCAGGCTTCTTGAGAAACTCCACCACTTC 20963530 >seq2 Length=27864329 Score = 120 bits (132), Expect = 4e-22 Identities = 144/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 ||||| || | ||||| |||||||| | ||| | || | | || || ||| | Sbjct 22153379 AAGAAGGCCCAATGGGCCTTGAAGTGGATCGATGGA---TCTCAGACTTTCGCAGAGAGG 22153435 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || | || || ||||| || || || ||||||||||| || ||||||| | || | Sbjct 22153436 ATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTC 22153495 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||||||||||||||| |||||||| || ||| ||||||||||||||| ||||| || Sbjct 22153496 TGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGG 22153555 Query 94930 GACGAGGGACTCCAC 94944 ||||| || || ||| Sbjct 22153556 GACGAAGGCCTTCAC 22153570 >seq10 Length=17599535 Score = 114 bits (126), Expect = 2e-20 Identities = 297/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | | | ||| ||||| |||||| | | || || || Sbjct 1381306 CGGTCAAAACGGCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 1381247 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||||||| || ||| Sbjct 1381246 GCAACAACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAAAGCTGATTA 1381187 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | || ||||| | ||||||||| || | ||||| | | |||| | ||||| Sbjct 1381186 AGCGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCCACA 1381127 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||| |||||||| | ||||| || || || || || || || || ||| Sbjct 1381126 GCATCTATCTCATCCACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAAAGA 1381067 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || | | || || ||||| ||||||||||| ||||| | | | | | || Sbjct 1381066 TCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-AGAT 1381008 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | | ||| || || || |||||| |||||||| || | || || || || || Sbjct 1381007 GGAAAAGAACGGTACGCCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCCAGT 1380948 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCT 9942 ||| || ||| ||||||| ||||| || ||| || || || | | || Sbjct 1380947 ACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAACCT 1380888 Query 9943 CTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 |||||| | ||| ||||| ||||| | ||| Sbjct 1380887 CTCAGGCTTCTTCAGAAACTCCACCACTTC 1380858 >seq6 Length=26286742 Score = 114 bits (126), Expect = 2e-20 Identities = 391/606 (65%), Gaps = 15/606 (2%) Strand=Plus/Plus Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTG--TGTTCCCCCTGAAGTATCCAC 94402 || || || || |||| || | | ||||||| ||| ||||||| | | || || | Sbjct 22599048 GAGCCGCTTCTCACCCCAACCCCAGACAGATT--CTGCATGTTCCCGATCCACTAACCGC 22599105 Query 94403 ACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGATC 94462 | ||||||| | || |||||||| | | ||||| || ||||| || |||| Sbjct 22599106 AGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTCGATC 22599165 Query 94463 TCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAAT 94522 |||| | || ||| ||| ||| ||| || || || | ||||| ||| Sbjct 22599166 TCTCGCAAGACACTCGCGACTGGGAGAATCTCAACGACGGAGAGCGCCACTTCATCAAAC 22599225 Query 94523 ACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAACT 94582 || |||| || ||||| || | ||||| ||||| ||||| |||||| || | | Sbjct 22599226 ACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTTTTAGAGAATCTCG----CCTCC 22599281 Query 94583 TTGCTGATG----AGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCAT 94638 | | ||| | |||||| ||| || ||| | ||||||| | || ||| Sbjct 22599282 CGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAGATCGCG 22599341 Query 94639 AATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGT 94698 | ||| | | || |||| ||||| || | |||| ||| || ||||| Sbjct 22599342 ATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGACACGTACATCAAGGACAAC 22599401 Query 94699 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCG 94758 |||| | | || ||||| || || |||| | || || | ||||| || Sbjct 22599402 AAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAAGAAGGCC 22599461 Query 94759 GATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 94818 | ||||| ||||||||| | || | || | | || || ||| | || | || Sbjct 22599462 CAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCCGAGAGGATCGTGGCG 22599518 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 ||||| || || || || ||||||||||| || ||||||| | || | ||||| ||| Sbjct 22599519 TTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTGAAG 22599578 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 |||||||| |||||||| ||| | ||||||||||||| | |||||||| ||||| || Sbjct 22599579 AAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGGC 22599638 Query 94939 CTCCAC 94944 || ||| Sbjct 22599639 CTTCAC 22599644 >seq7 Length=22597724 Score = 111 bits (122), Expect = 2e-19 Identities = 252/375 (67%), Gaps = 8/375 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| | |||| | |||||| || || | |||| | ||| | | | | ||| Sbjct 17639053 TCAAGCACATCAGGCCTATTCGTAGCAGCCAAAACAATCACACCAGAGTTACCACTAAAC 17639112 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| |||| | || ||||| || || |||| ||||||||| || | | Sbjct 17639113 CCATCCATCTCAGTCAGCAACTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--CCTC 17639170 Query 9677 CCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 9734 ||| ||||| | | ||| | ||||| |||||||||||||| || || || || || | Sbjct 17639171 CCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATACAAG 17639230 Query 9735 GTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 | || || || |||| ||| | ||||| || | ||| ||||||||||| Sbjct 17639231 GCGCCTTA--GCCTTCGCCTTCTCAAACAAATCCCTAACCCTAGAGGCACCCACACCAAC 17639288 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9852 || | ||| ||||| | | || | || || ||| || || || || || || Sbjct 17639289 GAAAAGCTCAACAAACTCAGACGCCGCGCAGGAGAAGAACGGCACTCCAGCCTCTCCAGC 17639348 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 9912 | |||| || | |||||||||||| || || || |||| ||||||| |||| Sbjct 17639349 CACAGCTCTAGCTAAAAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGAGACAACCTTT 17639408 Query 9913 TGGAATCTTGGCGCC 9927 |||||||||||||| Sbjct 17639409 GGGAATCTTGGCGCC 17639423 >seq5 Length=23960834 Score = 105 bits (116), Expect = 8e-18 Identities = 231/340 (68%), Gaps = 16/340 (5%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | ||| ||||| || | || | ||||| || | | ||||| Sbjct 7217382 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 7217441 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || || || ||||| | ||| ||||| | |||||||| || Sbjct 7217442 CCATCCATCTCAGTTAACAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTACCT------ 7217495 Query 9677 CCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 ||||| | | ||| | ||| | || || |||||||||||||||| ||||||||| Sbjct 7217496 CCACCGATCCCTGTCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAACAAAGACGATG 7217555 Query 9731 CATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 || || || || || | ||| ||| ||||| || || | || || ||||| Sbjct 7217556 CAAGGAGCGTTCTCCTTAGCCTTCTTGAAA-AGATCACGGACCCTGGAAGCACCAACACC 7217614 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 ||||||||||| ||||| | | ||| | || | || ||| || || || ||||| Sbjct 7217615 GACAAACATCTCAACAAACTCGGACCCGG-AGATAGAGAAGAACGGCACGCCAGCTTCAC 7217673 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || || ||| || ||||| ||||| || ||||| || Sbjct 7217674 CAGCTATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCAGG 7217713 >seq3 Length=31725688 Score = 105 bits (116), Expect = 8e-18 Identities = 137/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 94749 AAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCG 94808 ||||||||| | ||||| ||||||||| | || | || | |||| || ||| | Sbjct 18728106 AAAGAAAGCTCAGTGGGCGATGAAGTGGATCGACGGA---TCTCAGACCTTCGCGGAGAG 18728162 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868 | |||| || || || | | || ||||||||||| ||| ||||||| | || | Sbjct 18728163 GAGCATCGCCTTCGCCTGCGCATAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTT 18728222 Query 94869 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 94928 ||||||||||| ||||| || ||||| ||| | ||||||||||||| | |||||||| Sbjct 18728223 CTGGCTCAAGAAACGAGGGCTTATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCTCG 18728282 Query 94929 TGACGAGGG 94937 ||||| || Sbjct 18728283 AGACGATGG 18728291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582967354200760