Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 4e-11 >seq1 Length=28635137 Score = 82.4 bits (90), Expect = 4e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| ||||| ||||||||||| | | || || ||||| |||| | ||| | Sbjct 4091614 CGTGTGCCAAATTGACCATTTGGTTGAAGCAGGTTTATGTTGTTGCTGCCAACATAATCC 4091673 Query 65147 TGAGCCATTCCGATAATTG---CTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAA 65203 || ||||| || || || | | ||| | |||| || |||||||||||| | || Sbjct 4091674 TGCGCCATGCCAATGATCGTACCGGCA---AGACTCTGCTCGCCGTGATGATATGCCGAG 4091730 Query 65204 TGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTA 65263 || ||||| ||||| ||| ||||| ||||| || ||| |||| |||||| ||||| Sbjct 4091731 TGCTCAGATACATAACCAGAGAATTGGGCAACCTTGGCCTCCTTTGTGAAATTCCTTTTA 4091790 Query 65264 AATGCAGAATACAATATTTT 65283 || | | || | | ||| || Sbjct 4091791 AACGAACAAAAAAGTATCTT 4091810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235564390784850