Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 172 6e-38 seq6 138 1e-27 seq7 89.7 6e-13 seq3 86.0 7e-12 >seq2 Length=27864329 Score = 172 bits (190), Expect = 6e-38 Identities = 368/539 (68%), Gaps = 23/539 (4%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | || |||||| ||| |||||| | |||||| || |||| Sbjct 22153041 TGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGACA 22153100 Query 59653 TGAAGGATTGGGA---CAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 || ||||| ||| ||||| ||| ||||| || |||||||| ||||| | Sbjct 22153101 CCCGCGACTGGGAGACCAACCTCAACGACGGCGAGCGCCACTTCATCAAACACGTCCTCG 22153160 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACAT---GAACTTTTCCA 59766 |||||||||| || || ||||| || | || ||| | | | | | | ||| Sbjct 22153161 CCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCCCGGTTCATGTCC- 22153219 Query 59767 AGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCT 59825 || || ||| | ||||||| || | ||||||| || ||| ||| | ||| | Sbjct 22153220 --GACGTGCAGGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAGATCGCG-ATTGAGAAT 22153276 Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 |||||||| |||| |||| ||| || | |||| | ||||||| | |||| | Sbjct 22153277 ATCCACTCGGAGATGTACAGCCTCTTGCTAGATACCTACATCAAGGACAACAAGGAGAGG 22153336 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | ||| ||||| || || ||||| |||| || || | || || ||||||| Sbjct 22153337 GACCATCTCTTCCGCGCGATTGAGACCATCCCTTGC-GTCGCGAAGAAGGCCCAATGGGC 22153395 Query 59945 CATGCAGTGGAT-GAGTCCTGGAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCA 59999 | || ||||||| || |||| | ||| || ||| | | || | || || || Sbjct 22153396 CTTGAAGTGGATCGA----TGGATC-TCAGACTTTCGCAGAGAGGATCGTGGCCTTCGCG 22153450 Query 60000 TGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGT 60059 ||||||||||| ||||||||||| || ||||| | || ||||||||||| ||||| Sbjct 22153451 TGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGA 22153510 Query 60060 GGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 || ||||||||||| || | ||||||||||||||||| || |||||||| ||||| || Sbjct 22153511 GGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGGGACGAAGGCCTTCA 22153569 >seq6 Length=26286742 Score = 138 bits (152), Expect = 1e-27 Identities = 508/776 (65%), Gaps = 30/776 (4%) Strand=Plus/Plus Query 59658 GATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTC 59717 || ||||| || ||||| ||| |||| || |||||||| ||||| ||||||||| Sbjct 22599183 GACTGGGAGAATCTCAACGACGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTC 22599242 Query 59718 GCGGCGAGTGATGGAATTGTGATGGAAAATATAGACAT---GAACTTTTCCAAGGATGTC 59774 || || || ||||| || | || ||| | | | | | | ||| || || Sbjct 22599243 GCCGCCTCCGACGGAATCGTTTTAGAGAATCTCGCCTCCCGGTTCATGTCC---GACGTG 22599299 Query 59775 CAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTC 59833 || | ||||||| || | ||||||| || ||| ||| | ||| ||||||||| Sbjct 22599300 CAAGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAGATCGCG-ATTGAGAATATCCACTC 22599358 Query 59834 CGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCT 59893 |||| |||| ||| || |||| | || ||||||| |||||| || || Sbjct 22599359 AGAGATGTACAGCCTCCTGCTCGACACGTACATCAAGGACAACAAAGAGAGGGACCACCT 22599418 Query 59894 GTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 ||||| || || || || |||| || || | || || ||||||||||| ||| Sbjct 22599419 CTTCCGCGCGATTGAAACCATCCCTTGC-GTCGCGAAGAAGGCCCAATGGGCCATGAAGT 22599477 Query 59953 GGATGAGTCCTGGAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 |||| | | ||| | ||| || || | | || | || ||||| ||||||||| Sbjct 22599478 GGATC-GAC--GGATC-TCAGACTTTCGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAA 22599533 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 || ||||||||||| || ||||| | || |||||||| || ||||| || |||||| Sbjct 22599534 GGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTCTGGCTGAAGAAGCGAGGGCTCATG 22599593 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTT 60128 ||||| | | |||||||||||| |||| || || ||||| ||||| || || || Sbjct 22599594 CCGGGTTTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGGCCTTCACTGCGACTTC 22599653 Query 60129 GCAGTGAC-GCTCTATTCACACCTATTG-GAAAAATGCCCTTCCAAGGA---TATTCACA 60183 || || | | ||||| | |||||| | | | || | | |||| | | Sbjct 22599654 GC-CTGCCTGATCTATAC---TCTATTGAGGACGAAGCTC-ACGGAGGAGCGCGTGAAGT 22599708 Query 60184 AGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGC 60242 ||||| || | | ||| || | ||||| ||||| | || |||||||| ||| Sbjct 22599709 CGATTG-TCTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGC 22599767 Query 60243 AAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC 60302 | | || ||| || || |||| ||||| ||| ||||||| ||||| | Sbjct 22599768 GCGTTGGTGGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTGGCGGATAGG 22599827 Query 60303 CTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATG 60362 || ||| | | |||| | || | ||||| ||| || || || || |||||| Sbjct 22599828 CTTTTGGGCGCGCTTGGGTAGGGGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATG 22599887 Query 60363 GAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||| || ||| | | ||||| || ||||||||||||||| | || |||||||| Sbjct 22599888 GAGTTGATTTCGCTTCAGGGGAAAACGAACTTCTTTGAGAAGAGAGTTGGGGATTA 22599943 >seq7 Length=22597724 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 |||||||| || ||||||||||| ||| | || || ||||| || ||| |||||| ||| Sbjct 4843288 TTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGTCTTATGCCTGGTTTGACTTTCTCAAAC 4843229 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| ||||| |||||||||| ||||| Sbjct 4843228 GAGCTTATTTCGAGGGACGAGGGGCTCCA 4843200 >seq3 Length=31725688 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 59987 CATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 ||| || || || |||| |||| ||||||||||| || ||||| | || ||||| Sbjct 18728166 CATCGCCTTCGCCTGCGCATAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTG 18728225 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 |||||| || || || || ||||| || ||| |||||||||||| |||| || || || Sbjct 18728226 GCTCAAGAAACGAGGGCTTATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCTCGAGA 18728285 Query 60107 CGAGGGC 60113 ||| ||| Sbjct 18728286 CGATGGC 18728292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548248830316560