Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 seq1 86.0 5e-12 >seq3 Length=31725688 Score = 100 bits (110), Expect = 2e-16 Identities = 188/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 || || ||||| || || | | |||||||| || || || | || | || ||| Sbjct 20592699 TACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGA 20592758 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || | |||| | || || ||||||||| || |||||||| || || || || | ||| Sbjct 20592759 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATA 20592818 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 30073 ||| | || | ||| || | ||| || |||||||| || || ||| || ||||| | Sbjct 20592819 TCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 20592878 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 ||||| ||||||||||| || ||||| || | ||| |||||||| || | Sbjct 20592879 AACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGAT 20592935 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 | ||||| |||| || || || |||||| |||| Sbjct 20592936 AATATGATACGCCGATCATCAGGATTGTTCTTGAT 20592970 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 29591320 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 29591379 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 29591380 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 29591439 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 29591440 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 29591496 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || || | || || || |||||| |||| Sbjct 29591497 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 29591538 >seq1 Length=28635137 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||| ||||| | || | || || || ||||| |||||||||||| ||||| || || Sbjct 1752377 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCCAG 1752318 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||| || |||||||| | |||||||| Sbjct 1752317 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 1752258 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 1752257 CTGAGCAAACAT---GTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 1752201 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || || | || || || |||||| |||| Sbjct 1752200 AGCCGACATTATAATCCGGCGATCGTCAGGATTGTTCTTGAT 1752159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406111090654908