Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3 122 8e-23 >seq3 Length=31725688 Score = 122 bits (134), Expect = 8e-23 Identities = 210/297 (71%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACATGAGCGA 6626 ||| |||||||| | ||| || | || ||||| || | | | ||| |||||||| | Sbjct 20592704 ATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACAC-ACATGAGCTA 20592762 Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 |||| | || || |||| ||| ||||||||| |||||||| || | | ||| || Sbjct 20592763 GCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCG 20592822 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG-GCAGAGG 6745 | || || ||||| | |||||| || |||||||| | ||| || ||||| || ||| | Sbjct 20592823 CTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCAAACA 20592882 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 |||||||||| || ||||||||||| ||| || |||||||| || | | | | Sbjct 20592883 -TGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGATAATATG 20592941 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTC 6861 || | | |||||||| || ||| | ||||||| |||| |||| ||||| || Sbjct 20592942 ATACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACGT-CTGCGAGCTGATC 20592997 Score = 122 bits (134), Expect = 8e-23 Identities = 210/297 (71%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 34484 GACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGT 34542 || ||||| |||| |||| ||||||| | ||| || |||||||| | | ||| | Sbjct 20592997 GATCAGCTCGCAG-ACGTAATCGACAAGATCAAGAACAATCCTGATGATCGGCGTATCAT 20592939 Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602 | | || |||||||| || ||| ||||||||||| || |||||||||| | Sbjct 20592938 ATTATCTGCTTGGAACCCTTCTGACCTCAAGCTGATGGCGCTGCCTCCGTGCCACA-TGT 20592880 Query 34603 CTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| || ||||| || ||| | |||||||| || |||||| | ||||| || || | | Sbjct 20592879 TTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTCATGCCAGATGTATCAGCGTTCAGCGG 20592820 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 | ||| | | || |||||||| ||||||||| ||| |||| || || | |||| | | Sbjct 20592819 ATATGAGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTAG 20592760 Query 34722 CTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 ||||||| ||| | | | || ||||| || | || ||| | |||||||| ||| Sbjct 20592759 CTCATGT-GTGTGATCTTGTCCCTGGTGATTTTGTCCATGTCATTGGGGATGCTCAT 20592704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448036873583280