Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 seq1 95.1 1e-14 >seq3 Length=31725688 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| |||||||| | ||| |||| ||| || |||||||| Sbjct 29591363 TTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCT 29591422 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 ||||||||||| |||||||| | ||||| || ||||| || |||| | || Sbjct 29591423 CCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGG 29591482 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||||||||| |||| Sbjct 29591483 TCAGAAGGATTCCAAGCTG 29591501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| ||||||||||||||||| ||| | || |||||||| ||| | || || Sbjct 20592698 ATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATG 20592757 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | || | | | |||| || | ||||| || ||||| || | ||| Sbjct 20592758 AGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCAT 20592817 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || ||||| | ||| |||| ||||| ||||||||||| | || ||||| ||||| Sbjct 20592818 ATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGC 20592877 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| || |||||||| |||| Sbjct 20592878 AAACATGTGGCACGGAGGCAGCGCCAT 20592904 >seq1 Length=28635137 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || |||||||||||||| || ||||| | ||| |||| ||| || || ||||| Sbjct 1752334 TTAAACGGTACACCCAGACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCT 1752275 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || |||||||| ||||||||| | ||||| |||||||| || |||| Sbjct 1752274 CCATTTGCAACGTAAAACTGAGCAAACATGTGGCATGGAGGAAGTGCCAT 1752225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414273484752436