Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 9e-15 seq3 91.5 1e-13 seq6 84.2 2e-11 >seq1 Length=28635137 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||| | || || || ||| || | || || |||||| || Sbjct 22221874 ATGCAAATCTTCGTTAAGACTTTGACGGGAAAGACTATCACTTTGGAGGTTGAAAGCTCC 22221815 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| |||||| || || |||||||| ||| | || || | Sbjct 22221814 GACACTATTGACAAC--GTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 22221757 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| || |||| || | |||| |||| | ||||||| Sbjct 22221756 AGCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGTCGCACCTTGGCAGATTACA 22221697 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| || | || ||||| |||||| | ||||| ||| Sbjct 22221696 ACATCCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGGC 22221647 >seq3 Length=31725688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| |||| || ||||||||||| || ||||| || | |||| |||| | || Sbjct 13311085 GGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGCACCTTGGCGGA 13311144 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| || |||||| ||| | || ||||| |||||| | ||||| ||| Sbjct 13311145 TTACAACATTCAGAAAGAGTCAACTCTTCACTTGGTCTTGCGTCTACGTGGAGGC 13311199 >seq6 Length=26286742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || || || || |||| || |||||| | Sbjct 15796272 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 15796331 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || |||| || | || | || | | || ||||| ||||| |||| || Sbjct 15796332 GACACCATCGACAA-CGTTAAAGCCAAGATTCAG--GACAAGGAAGGCATTCCTCCTGAT 15796388 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || || |||||||| || ||||| |||| | | |||| | |||||| Sbjct 15796389 CAGCAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGGACCTTGGCTGATTAC 15796448 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || ||||| || ||| || | || |||| |||||| | ||||| ||| Sbjct 15796449 AATATCCAGAAGGAGTCTACGCTTCACCTGGTCTTGCGTCTACGTGGAGGC 15796499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355687837148823