Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9 102 7e-17 seq7 93.3 4e-14 seq1 91.5 1e-13 seq10 89.7 4e-13 seq3 86.0 5e-12 >seq9 Length=37155481 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || | || || ||||| || || ||| |||| || ||||| Sbjct 30362448 ATGAAGCGTCGACTCCTTCTGGGTGTTGTAGTCGGCGAGCGTGCGTCCGTCTTCCAGCTG 30362389 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || || ||||||||||||| || | || || |||||| ||| || Sbjct 30362388 CTTCCCGGCGAAAATCAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTT 30362329 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | || ||| ||||| || || | ||||| |||||||||| Sbjct 30362328 GGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTTCCCGT 30362269 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 || ||||| |||||||| ||||||||| || || Sbjct 30362268 AAGGGTTTTCACAAAGATCTGCATCTTTGCGGCG 30362235 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || ||| || || ||||| ||||| || || |||| || Sbjct 16984484 CGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATATTGTAATCAGCGAGGGTTCTGCCG 16984543 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || ||||| || | |||||||||||||| || | | ||| ||| Sbjct 16984544 TCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTG 16984603 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||| || | || | ||| | | | || ||| |||||| || | |||||| Sbjct 16984604 TCTTGGATCTT-AGCTTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGCGTGAT 16984662 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || ||||||||||| ||||| Sbjct 16984663 CGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT 16984698 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || ||| || || || || || |||||||| || || | Sbjct 16984028 CGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCA 16984087 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| || || || |||||||||||||| || ||| | || || || Sbjct 16984088 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCT-TCCTT 16984146 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGT 39245 ||| |||||| |||| | | | || || ||| |||||| || | || Sbjct 16984147 GTCTTGGATTTTGGCCTTGACGTTATCAATGGTGTCCGAGCT---CTCCACCTCAAGTGT 16984203 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||| || || || || |||||||| ||||| Sbjct 16984204 GATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 16984242 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| |||||| || || || |||||| || || || || || || || || || | Sbjct 16960257 CGTAGCACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCTAGGGTGCGACCA 16960316 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| ||||| || | |||||||||||| | || | || |||||| Sbjct 16960317 TCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCTTTG 16960376 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || |||||| ||| | ||| | | | || ||| |||||| || | || || Sbjct 16960377 TCTTGGATTTTGGCTTTCA-CGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGAGTAAT 16960435 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || || |||||||| ||||| Sbjct 16960436 GGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 16960471 >seq7 Length=22597724 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 13483604 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCGAGCTG 13483545 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || || ||||||||||| | || | || || |||||| ||| || Sbjct 13483544 TTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 13483485 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || ||| ||||| || || | ||||| | || |||| Sbjct 13483484 GGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTCCCCG 13483426 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 | || ||||| || ||||| ||||||||| || || Sbjct 13483425 TGAGGGTTTTCACGAAGATCTGCATCTTTGCGGCG 13483391 >seq1 Length=28635137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | || || || ||||| || ||||| ||| || || || || ||||| Sbjct 22221644 CATGCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAATC 22221703 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 || | || || | || || ||||| || || ||||| || | | ||||||||| || Sbjct 22221704 TGCCAAGGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGG 22221763 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGAC 39231 |||| | | ||||||||| ||| || ||||| ||| | || || ||| Sbjct 22221764 TGGG-ATACCCTCTTTGTCTTGGATCTTGGCTTTGA-CGTTGTCAATAGTGTCGGAGCTT 22221821 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| |||||| | |||||||||| || ||||| ||||||||||| Sbjct 22221822 TCAACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCAT 22221874 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||||||| |||| | | || || | ||| ||||| ||||| Sbjct 22221911 CTCCTTCTGGATGTTGTAGTCGGCAAGAGTTCTTCCATCCTCCAACTGCTTGCCGGCAAA 22221970 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || || | ||||||||| |||||| | | ||| || ||| ||| || || | || Sbjct 22221971 GATGAGCCTCTGCTGGTCCGGTGGG-ATTCCCTCCTTATCCTGGATCTTGGCCTTAA-CG 22222028 Query 39212 TCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | |||||| || || |||| ||||| | ||||| ||||| |||||| Sbjct 22222029 TTGTCGATGGTATCGGAGCTTTCAACCTCCAAAGTGATCGTCTTTCCGGTCAGAGTTTTA 22222088 Query 39271 ACAAAGATTTGCATCT 39286 |||||||| ||||||| Sbjct 22222089 ACAAAGATCTGCATCT 22222104 >seq10 Length=17599535 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/221 (71%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| | || || || ||| || || ||||||||||| ||||| || || | Sbjct 17168579 CGCAACACAAGGTGAAGGGTAGACTCCTTCTGAATATTATAATCCGCAAGCGTACGACCA 17168520 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || ||||||||||| || || || || || | ||||||||| |||||| | || || || Sbjct 17168519 TCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGG-ATGCCTTCCTT 17168461 Query 39189 GTCCATGATTTTCTG-TTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACC 39243 |||| ||| | | || ||||| ||| | | | ||| || ||| ||| || |||| Sbjct 17168460 GTCC-TGAATCTTTGCTTTGA-CGTTGTCAATCGTGTCAGAGCT---CTCAACCTCCAAG 17168406 Query 39244 GTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| || |||| || || |||||||| ||||| Sbjct 17168405 GTAATTGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 17168365 >seq3 Length=31725688 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || ||| |||| || ||||| Sbjct 11141070 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCCAGCTGC 11141011 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||| | || | || || |||||| ||| || Sbjct 11141010 TTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 11140951 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || ||| ||||| || || | ||||| | || ||||| Sbjct 11140950 GCCTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATTGTCTTCCCCGTG 11140891 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTT 39288 || ||||| || ||||| ||||||||| Sbjct 11140890 AGGGTTTTCACGAAGATCTGCATCTTT 11140864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429334892983337