Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq1 82.4 6e-11 >seq3 Length=31725688 Score = 123 bits (136), Expect = 2e-23 Identities = 193/275 (70%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 || || |||||||| || | | |||||||| || || || | || | || ||| Sbjct 20592699 TACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGA 20592758 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || | |||| | || || ||||||||| || |||||||| ||||| || || | ||| Sbjct 20592759 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATA 20592818 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 29845 ||| |||| | ||| || | |||||| |||||||| || || ||| || ||||| | Sbjct 20592819 TCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 20592878 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 ||||| ||||||||||| || ||||| || | ||| |||||||| ||| | Sbjct 20592879 AACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGAT 20592935 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | ||||| |||| || || || |||||| |||| Sbjct 20592936 AATATGATACGCCGATCATCAGGATTGTTCTTGAT 20592970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||| ||||| | ||| | || || || ||||| ||| |||||||| || || || || Sbjct 29591320 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 29591379 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || |||||||||||||||| |||||||| Sbjct 29591380 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 29591439 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 29591440 CTGTGCAAACATG---TGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 29591496 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || || | || || || |||||| |||| Sbjct 29591497 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 29591538 >seq1 Length=28635137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/222 (68%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||| ||||| | || | || || || ||||| |||||||||||| || || || || Sbjct 1752377 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCCAG 1752318 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || || || |||||||| | |||||||| Sbjct 1752317 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 1752258 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 1752257 CTGAGCAAACATG---TGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 1752201 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || || | || || || |||||| |||| Sbjct 1752200 AGCCGACATTATAATCCGGCGATCGTCAGGATTGTTCTTGAT 1752159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405963962861614