Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 3e-14 seq1 89.7 4e-13 >seq3 Length=31725688 Score = 93.3 bits (102), Expect = 3e-14 Identities = 194/288 (67%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 ||||||| | || || ||||| || || | | |||||||| || || || | || Sbjct 20592686 CACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 20592745 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 20592746 ATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 20592805 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 || || | ||| ||| | || | ||| || | ||| || |||||||| || || || Sbjct 20592806 ACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCAC 20592865 Query 27330 GTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 || ||||| | | ||| ||||||||||| || ||||| || | ||| || Sbjct 20592866 ATAGAACTGCGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGG 20592922 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 |||||| || | | ||||| |||| || || || |||||| |||| Sbjct 20592923 GTTCCAAGCAGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 20592970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 29591320 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 29591379 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 ||||| || | || | ||| || | ||||||||||||||||| | |||||||| Sbjct 29591380 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 29591439 Query 27336 CTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392 ||| | | || |||||| |||||||| ||||| || | ||| || ||||| Sbjct 29591440 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 29591496 Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 || ||| || || || | || || || |||||| |||| Sbjct 29591497 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 29591538 >seq1 Length=28635137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||| ||||| | || | || || || ||||| |||||||||||| ||||| || || Sbjct 1752377 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCCAG 1752318 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 ||||| || | || | ||| || | ||||| || |||||||||| |||||||| Sbjct 1752317 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 1752258 Query 27336 CTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 27395 |||| | |||||| |||||||| ||||| || | ||| || ||||| || Sbjct 1752257 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 1752198 Query 27396 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 ||| || || || | || || || |||||| |||| Sbjct 1752197 CGACATTATAATCCGGCGATCGTCAGGATTGTTCTTGAT 1752159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369325943901119