Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 102 1e-16 seq6 95.1 2e-14 >seq8 Length=21613650 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | || | || || | ||| |||| | || |||||||| |||||| Sbjct 16023300 CCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACCA 16023359 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| ||||||||| |||| || || || || || Sbjct 16023360 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGAA 16023419 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || ||| ||| | || || |||||| ||||| || || Sbjct 16023420 ACACCGATACCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAACGTATCATATATT 16023479 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || || |||||| ||||| Sbjct 16023480 CCCTCGATGCTATCATCCTTCATG 16023503 >seq6 Length=26286742 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||| | || || | ||| | || | || |||||||| |||||| Sbjct 24943935 ACCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACC 24943994 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 |||||| ||||| || ||| ||| ||||||||| | || || || || || || Sbjct 24943995 ATTAGATTCCCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGA 24944054 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || || || || |||| ||| | || || |||||||||||| || || Sbjct 24944055 AACACCAATACCCCCAGCTGACTTACTTATAACCGCACACTCTTTCAATGTATCATAAAT 24944114 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || |||||| ||||| | ||||| ||||| Sbjct 24944115 CCCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 24944156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694319303443360