Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 109 8e-19 seq2 109 8e-19 >seq6 Length=26286742 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| | ||||| | || ||||| ||||||||||||||| | ||| | || || Sbjct 24944257 AGTTCCAGAGTTAAAGAGGGTCGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATG 24944316 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||| || | | | ||| || |||||| || |||||| || |||| || | ||| | Sbjct 24944317 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 24944376 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| || || | |||||| | ||||||| | || | Sbjct 24944377 CATGTGCTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 24944436 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| || || ||||| |||| ||| |||||| | |||||||| || Sbjct 24944437 AGTCTTGAATCCAAAGTAGTCATATTCAAAGTCACGGTCGTAAATGAT 24944484 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 |||||||||||||||||| || || || || |||||||||||||| ||||| | | || Sbjct 24942681 AAGAATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGCCTATGACGCAAGTT 24942740 Query 76144 GGAAATTTCAG-CTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| || | ||| ||||| || | ||| | ||| || || ||||||||||| Sbjct 24942741 TGAAGTTTTAGCCGTCT-CCATAGGATAGTGATTCACATCAATTATCTTATTGAGATT 24942797 >seq2 Length=27864329 Score = 109 bits (120), Expect = 8e-19 Identities = 376/581 (65%), Gaps = 9/581 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || ||||||||||| || | || | ||||| || || |||||| Sbjct 22153584 CACGCGAAGTCGCAGTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGC 22153525 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || || ||||| |||||||| || || | ||| ||| || ||||| Sbjct 22153524 CCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAG 22153465 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAA 46807 || ||||| || |||||| || || | |||||| || || ||| ||| || | Sbjct 22153464 ATCCCTTCCACGCACGCGAAGGCCACGATCCTCTCTGCGAAAGTCTGAGATC--CATCGA 22153407 Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867 ||||| | ||||| | ||||| ||| || ||||| || || || || || | Sbjct 22153406 TCCACTTCAAGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGA 22153347 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 ||||| || | || | | || || | || ||||||| || || || ||||| | Sbjct 22153346 AGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTAGGTATCTAGCAAGAGGCTGTACATCT 22153287 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 | || || || || ||||| || ||||| || ||||| || | || || | | || Sbjct 22153286 CCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACCT 22153227 Query 46988 GTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 | || || | ||| || || | | |||||| || ||||| || || || Sbjct 22153226 GCACGTC-GGACATGAACCGGGAGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCG 22153168 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT---TATTCCAG 47103 || || || | || ||||| || || | || || | || | | | |||| Sbjct 22153167 AAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGGTTGGTCTCCCAG 22153108 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 || | | |||| || | || ||||| || || |||||||| || || || ||||| Sbjct 22153107 TCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTC 22153048 Query 47164 TTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 || ||||| | ||| || | | | || |||||||| || || Sbjct 22153047 TTGTACATCTCCCAGATCTGAGGGTAGTGGATCGGGAACAT 22153007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712575713791680