Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq10 86.0 5e-12 >seq10 Length=17599535 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || |||||||| ||||| |||||| |||| || | Sbjct 17168365 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACAATTACCTTGGAGGTTGAGAGCTCT 17168424 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || ||| ||| ||| ||||| |||||| | || || || Sbjct 17168425 GACACGATTGACAACGTCAAAGCAAAGATTCAGGACAAGGAAGGCATCCCACCAGACCAG 17168484 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || || || | || || ||||| | || ||| | || | || ||||||||| Sbjct 17168485 CAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCGGATTATAAT 17168544 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || ||||| || || | ||||||||||| || ||||| Sbjct 17168545 ATTCAGAAGGAGTCTACCCTTCACCTTGTGTTGCGTCTCCGTGGTGG 17168591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421604286974824